Evaluation of Physical and Functional Protein-Protein Interaction Prediction Methods for Detecting Biological Pathways

Effect of Reference Genome Selection on the Performance of Computational Methods for Genome-Wide Protein-Protein Interaction Prediction

(2012) Vijaykumar Yogesh Muley et al.   PLoS One

Comparison of phylogenetic trees through alignment of embedded evolutionary distances

(2009) Kwangbom Choi et al.   BMC BIOINFORMATICS

Origin and evolution of metabolic pathways

(2009) Renato Fani et al.   Physics of Life Reviews

Transcriptome Complexity in a Genome-Reduced Bacterium

(2009) M. Guell et al.   SCIENCE

Predicting protein linkages in bacteria: Which method is best depends on task

(2008) Anis Karimpour-Fard et al.   BMC BIOINFORMATICS

Coordinating assembly of a bacterial macromolecular machine

(2008) Fabienne F. V. Chevance et al.   NATURE REVIEWS MICROBIOLOGY