Non-LTR R2 Element Evolutionary Patterns: Phylogenetic Incongruences, Rapid Radiation and the Maintenance of Multiple Lineages

28S junctions and chimeric elements of the rDNA targeting non-LTR retrotransposon R2 in crustacean living fossils (Branchiopoda, Notostraca)

(2012) Andrea Luchetti et al.   GENOMICS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The Reverse Transcriptase Encoded by the Non-LTR Retrotransposon R2 Is as Error-Prone as That Encoded by HIV-1

(2011) Varuni K. Jamburuthugoda et al.   JOURNAL OF MOLECULAR BIOLOGY

The Non-LTR Retrotransposon R2 in Termites (Insecta, Isoptera): Characterization and Dynamics

(2011) Silvia Ghesini et al.   JOURNAL OF MOLECULAR EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

(2010) Wenjie Deng et al.   BIOTECHNIQUES

R2 dynamics in Triops cancriformis (Bosc, 1801) (Crustacea, Branchiopoda, Notostraca): turnover rate and 28S concerted evolution

(2010) V Mingazzini et al.   HEREDITY

Maintenance of multiple lineages of R1 and R2 retrotransposable elements in the ribosomal RNA gene loci ofNasonia

(2010) D. E. Stage et al.   INSECT MOLECULAR BIOLOGY

Rotifer rDNA-specific R9 retrotransposable elements generate an exceptionally long target site duplication upon insertion

(2009) Eugene A. Gladyshev et al.   GENE

Noisy: Identification of problematic columns in multiple sequence alignments

(2008) Andreas WM Dress et al.   Algorithms for Molecular Biology

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Role of Recombination in the Long-Term Retention of Transposable Elements in rRNA Gene Loci

(2008) Xian Zhang et al.   GENETICS

Epigenetic Regulation of Retrotransposons within the Nucleolus of Drosophila

(2008) D. G. Eickbush et al.   MOLECULAR AND CELLULAR BIOLOGY

Relevance of satellite DNA genomic distribution in phylogenetic analysis: A case study with root-knot nematodes of the genus Meloidogyne

(2008) Nevenka Meštrović et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The diversity of retrotransposons and the properties of their reverse transcriptases

(2008) Thomas H. Eickbush et al.   VIRUS RESEARCH

Satellite DNAs between selfishness and functionality: Structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin

(2007) Miroslav Plohl et al.   GENE