Accurate Prediction of Protein Catalytic Residues by Side Chain Orientation and Residue Contact Density

POOL server: machine learning application for functional site prediction in proteins

(2012) Srinivas Somarowthu et al.   BIOINFORMATICS

Evolutionary information hidden in a single protein structure

(2012) Chien-Hua Shih et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

On the Relationship Between Catalytic Residues and their Protein Contact Number

(2011) Shao-Wei Huang et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Automatic prediction of catalytic residues by modeling residue structural neighborhood

(2010) Elisa Cilia et al.   BMC BIOINFORMATICS

Derivation of 3D coordinate templates for searching structural databases: Application to ser-His-Asp catalytic triads in the serine proteinases and lipases

(2010) Andrew C. Wallace et al.   PROTEIN SCIENCE

Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties

(2009) Wenxu Tong et al.   PLoS Computational Biology

Accurate sequence-based prediction of catalytic residues

(2008) Tuo Zhang et al.   BIOINFORMATICS

Prediction of protein functional residues from sequence by probability density estimation

(2008) J. D. Fischer et al.   BIOINFORMATICS

An improved prediction of catalytic residues in enzyme structures

(2008) Y.-R. Tang et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Deriving protein dynamical properties from weighted protein contact number

(2008) Chih-Peng Lin et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of NMR order parameters in proteins using weighted protein contact-number model

(2008) Shao-Wei Huang et al.   THEORETICAL CHEMISTRY ACCOUNTS