Process-Driven Inference of Biological Network Structure: Feasibility, Minimality, and Multiplicity

Analysis and Practical Guideline of Constraint-Based Boolean Method in Genetic Network Inference

(2012) Treenut Saithong et al.   PLoS One

Structural influence of gene networks on their inference: analysis of C3NET

(2011) Gökmen Altay et al.   Biology Direct

Regulation of exit from mitosis in multinucleate Ashbya gossypii cells relies on a minimal network of genes

(2011) Mark R. Finlayson et al.   MOLECULAR BIOLOGY OF THE CELL

The effect of scale-free topology on the robustness and evolvability of genetic regulatory networks

(2010) Sam F. Greenbury et al.   JOURNAL OF THEORETICAL BIOLOGY

Robust dynamics in minimal hybrid models of genetic networks

(2010) T. J. Perkins et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

A Minimal Model of Signaling Network Elucidates Cell-to-Cell Stochastic Variability in Apoptosis

(2010) Subhadip Raychaudhuri   PLoS One

Process-based network decomposition reveals backbone motif structure

(2010) G. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From gene expression to gene regulatory networks in Arabidopsis thaliana

(2009) Chris J Needham et al.   BMC Systems Biology

A Trade-Off between Sample Complexity and Computational Complexity in Learning Boolean Networks from Time-Series Data

(2009) T.J. Perkins et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

On Entropy-Based Molecular Descriptors: Statistical Analysis of Real and Synthetic Chemical Structures

(2009) Matthias Dehmer et al.   Journal of Chemical Information and Modeling

Sparse combinatorial inference with an application in cancer biology

(2008) S. Mukherjee et al.   BIOINFORMATICS

Evolvability and hierarchy in rewired bacterial gene networks

(2008) Mark Isalan et al.   NATURE

Entropy Bounds for Hierarchical Molecular Networks

(2008) Matthias Dehmer et al.   PLoS One

Structural information content of networks: Graph entropy based on local vertex functionals

(2007) Matthias Dehmer et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Simple computational models of type I/type II cells in Fas signaling-induced apoptosis

(2007) Noriaki Okazaki et al.   JOURNAL OF THEORETICAL BIOLOGY