Article
Multidisciplinary Sciences
Johanna Wolfsberger, Habib A. M. Sakil, Leilei Zhou, Niek van Bree, Elena Baldisseri, Sabrina de Souza Ferreira, Veronica Zubillaga, Marina Stantic, Nicolas Fritz, Johan Hartman, Charlotte Rolny, Margareta T. Wilhelm
Summary: Low levels of TAp73 are correlated with an increased NF-kappa B-regulated inflammatory signature in breast cancer, leading to hyperactivation of NF-kappa B pathway and secretion of Ccl2, which results in accumulation and phenotype transformation of pro-tumoral macrophages. These findings suggest that TAp73 regulates macrophage accumulation and phenotype in breast cancer through inhibition of the NF-kappa B pathway.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Article
Biochemistry & Molecular Biology
Matthew Martin, Rasika Mundade, Antja-Voy Hartley, Guanglong Jiang, Jiamin Jin, Steven Sun, Ahmad Safa, George Sandusky, Yunlong Liu, Tao Lu
Summary: ARMC4 is identified as a novel negative regulator of NF-kappa B, and may serve as a potential therapeutic target in colorectal cancer.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Medicine, Research & Experimental
Yiqing Tan, Ran Sun, Lei Liu, Dejuan Yang, Qin Xiang, Li Li, Jun Tang, Zhu Qiu, Weiyan Peng, Yuanyuan Wang, Lin Ye, Guosheng Ren, Tingxiu Xiang
Summary: This study identified the tumor suppression role of DRD2 in BrCa through downregulation due to promoter methylation, correlation with longer survival in HER2-positive patients, promotion of drug sensitivity, inhibition of tumorigenesis, induction of apoptosis and necroptosis, interaction with various genes to restrict signaling pathway activation, modulation of the microenvironment, and providing predictive and therapeutic targets for BrCa.
Article
Oncology
Wen -Ting Peng, Xi Jin, Xiao-En Xu, Yun-Song Yang, Ding Ma, Zhi-Ming Shao, Yi-Zhou Jiang
Summary: This study identifies ACAA1 as a potential therapeutic target for TNBC, specifically in the LAR subtype. Inhibition of ACAA1 can suppress TNBC proliferation and enhance the response to abemaciclib. The combination of trimetazidine and abemaciclib shows promise in treating ACAA1-high TNBCs.
Article
Plant Sciences
Lu Jin, Yingxue Guo, Weiye Mao, Jingwei Wang, Lushuai Jin, Xia Liu, Qiyang Shou, Huiying Fu
Summary: In this study, it was found that total glucosides of paeony (TGP) can improve the inflammatory microenvironment of tumors by inhibiting the release of inflammatory factors, thereby suppressing tumor growth and metastasis. TGP reduces the infiltration of tumor-associated macrophages (TAMs), promotes T cell infiltration, and regulates the levels of inflammatory factors to achieve these effects.
Article
Biochemistry & Molecular Biology
Lu Liu, Yuxi Lei, Wensheng Chen, Qian Zhou, Zongyao Zheng, Guandi Zeng, Wanting Liu, Pengju Feng, Zhiyi Zhang, Lei Yu, Liang Chen
Summary: In this study, we identified ZNF24 as a potent tumor suppressor gene in lung cancer. We found that ZNF24 inhibits the activity of NF-kappa B pathway, which is clinically relevant. Furthermore, combinational inhibition of KRAS, NF-kappa B, and PD-1 effectively reduced lung tumor size in mice.
CELL AND BIOSCIENCE
(2022)
Article
Cell Biology
Yan Zhang, Jielu Hao, Zijun Du, Peiyao Li, Jinghua Hu, Mengna Ruan, Shulian Li, Yuanfang Ma, Qiang Lou
Summary: Cisplatin nephrotoxicity, a serious side effect of cisplatin-based chemotherapy, can be exacerbated by HNF1 beta deficiency, leading to increased renal tubular cell apoptosis. HNF1 beta may ameliorate cisplatin nephrotoxicity by regulating the NF-kappa B signaling pathway.
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
(2021)
Article
Immunology
Zixi Chen, Mengzhe Zhang, Yunzhi Zhao, Wenjuan Xu, Fenfen Xiang, Xiaoxiao Li, Tao Zhang, Rong Wu, Xiangdong Kang
Summary: The NLRP3 inflammasome plays a crucial role in inflammatory responses, and hydrogen sulfide contributes to uterine quiescence by inhibiting the TLR4/NF-kappa B signaling pathway and downstream NLRP3 inflammasome activation.
JOURNAL OF INFLAMMATION RESEARCH
(2021)
Article
Oncology
Maxine Umeh-Garcia, Henriette O'Geen, Catalina Simion, Melanie Hayden Gephart, David J. Segal, Colleen A. Sweeney
Summary: This study reveals the association between DNA methylation and the silencing of the LRIG1 gene in basal/triple-negative breast cancer. The global demethylating agent 5-aza-2'-deoxycytidine decreases methylation and increases LRIG1 expression. Targeted demethylation and transcriptional activation using CRISPR/deadCas9 technology significantly enhances LRIG1 expression and reduces cancer cell viability.
BRITISH JOURNAL OF CANCER
(2022)
Article
Biochemistry & Molecular Biology
Veronica De Paolis, Fabio Maiullari, Maila Chirivi, Marika Milan, Chiara Cordiglieri, Francesca Pagano, Alessandra Rita La Manna, Elena De Falco, Claudia Bearzi, Roberto Rizzi, Chiara Parisi
Summary: The cellular heterogeneity in the tumor environment of breast cancer is complex, involving various cell types with different functions. The physical properties of the tumor extracellular matrix play a crucial role in protecting the tumor niche. TAMs with an immunosuppressive phenotype are important for establishing a tumor phenotype that evades the immune system. NF-kappa B transcription factors have a connection between inflammation and cancer. In TAMs, an unusual association of NF-kappa B components affects the stiffness of the tumor extracellular matrix.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Cell Biology
Kailing Zhou, Yu Sun, Dan Dong, Chenghai Zhao, Wei Wang
Summary: EMP3 acts as a potential tumor suppressor in breast cancer by inhibiting cell cycle progression, DNA repair, and stem-like properties, leading to enhanced sensitivity of breast cancer cells to DNA-damaging agents.
CELL DEATH & DISEASE
(2021)
Article
Biochemistry & Molecular Biology
Eun-Young Heo, Kyoung-Hee Lee, Jisu Woo, Jiyeon Kim, Chang-Hoon Lee, Kyung-Jin Lee, Yun-Kyu Kim, Chul-Gyu Yoo
Summary: This article investigates the role of CRBN in chronic obstructive pulmonary disease (COPD) pathogenesis. The study found that lower levels of CRBN protein were observed in COPD patients compared to never smokers and smokers. CRBN deficiency was shown to aggravate elastase-induced emphysematous changes and increase neutrophil infiltration, lung cell injury, and protein leakage into the bronchoalveolar space. Furthermore, CRBN deficiency led to elevated release of neutrophilic chemokines and inflammatory cytokines. The findings suggest that targeting CRBN could be an effective therapeutic approach for COPD treatment.
Article
Multidisciplinary Sciences
Lidija A. Wilhelms Garan, Yang Xiao, Weei-Chin Lin
Summary: This study reveals that approximately one-fourth of recurrent ER+ breast cancers lose ER expression, leading to endocrine therapy failure. 14-3-3 tau, which is up-regulated in about 60% of breast cancer, drives the conversion of ER+ to ER- and EMT. ER alpha 36 is identified as a downstream effector of 14-3-3 tau and can antagonize ER alpha 66. Additionally, GATA3 represses the promoter of ER alpha 36 and its phosphorylation by AKT plays a role in this regulation. Furthermore, the collaboration between 14-3-3 tau and AKT is demonstrated in ER alpha 36 induction and endocrine therapy resistance.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Article
Pathology
Li Li, Jin-hua Jin, Han-ye Liu, Xiao-fei Ma, Dan-dan Wang, Yi-lan Song, Chong-yang Wang, Jing-zhi Jiang, Guang-hai Yan, Xiang-zheng Qin, Liang-chang Li
Summary: Macrophages play a significant role in the development and complications of inflammation-driven diseases. This study provides evidence that TLR4 signaling activates Notch1 signaling in macrophages, which in turn regulates the expression of genes involved in pro-inflammatory responses by activating NF-kappa B. This effect may be dependent on the CYLD-TRAF6-IKK pathway.
PATHOLOGY RESEARCH AND PRACTICE
(2022)
Article
Medicine, Research & Experimental
Jade Jaffar, Ian Glaspole, Karen Symons, Glen Westall
Summary: Idiopathic pulmonary fibrosis (IPF) is a progressive lung disease with poor prognosis, and the transcription factor NF-ΚB is suggested as a potential therapeutic target. ACT001, an NF-ΚB inhibitor, showed inhibitory effects on fibroblast activity in primary lung fibroblasts from patients with and without IPF, indicating its potential as a therapeutic agent for IPF.
BIOMEDICINE & PHARMACOTHERAPY
(2021)
Review
Pathology
Esther Conde, Federico Rojo, Javier Gomez, Ana Belen Enguita, Ihab Abdulkader, Ana Gonzalez, Dolores Lozano, Nuria Mancheno, Clara Salas, Marta Salido, Eduardo Salido-Ruiz, Enrique de Alava
Summary: Accurate determination of the genomic status of the tumor is crucial for the effectiveness of targeted therapies in non-small-cell lung cancer patients. Immunohistochemistry and fluorescence in situ hybridisation are commonly used techniques, but challenges exist in interpreting results and meeting technical requirements.
JOURNAL OF CLINICAL PATHOLOGY
(2022)
Meeting Abstract
Oncology
R. E. Coleman, A. H. G. Paterson, R. R. Gomis
ANNALS OF ONCOLOGY
(2022)
Article
Multidisciplinary Sciences
Elisa Rivas, Jenniffer Linares, Melissa Zwick, Andrea Gomez-Llonin, Marc Guiu, Anna Labernadie, Jordi Badia-Ramentol, Anna Llado, Lidia Bardia, Ivan Perez-Nunez, Carolina Martinez-Ciarpaglini, Noelia Tarazona, Anna Sallent-Aragay, Marta Garrido, Toni Celia-Terrassa, Octavio Burgues, Roger R. Gomis, Joan Albanell, Alexandre Calon
Summary: This study identifies a population of cancer-associated fibroblasts that are involved in suppressing the effectiveness of trastuzumab-induced ADCC in HER2+ breast cancer patients who do not respond to HER2-targeted therapy. The presence of this cellular subset, activated by TGF-beta, is related to low IL2 activity in the tumor microenvironment. Stimulation of the IL2 pathway in the tumor stroma restores the anti-cancer efficiency of trastuzumab in unresponsive tumors.
NATURE COMMUNICATIONS
(2022)
Article
Hematology
Celia Gonzalez-Gil, Mireia Morgades, Thaysa Lopes, Francisco Fuster-Tormo, Jesus Garcia-Chica, Ran Zhao, Pau Montesinos, Anna Torrent, Marina Diaz-Beya, Rosa Coll, Lourdes Hermosin, Santiago Mercadal, Jose Gonzalez-Campos, Lurdes Zamora, Teresa Artola, Ferran Vall-Llovera, Mar Tormo, Cristina Gil-Cortes, Pere Barba, Andres Novo, Jordi Ribera, Teresa Bernal, Paula Lopez de Ugarriza, Maria-Paz Queipo, Pilar Martinez-Sanchez, Alicia Gimenez, Teresa Gonzalez-Martinez, Antonia Cladera, Jose Cervera, Rosa Fernandez-Martin, Maria Angeles Ardaiz, Maria Jesus Vidal, Angela Baena, Nuria Lopez-Bigas, Anna Bigas, Jaroslaw Maciejewski, Alberto Orfao, Josep Maria Ribera, Eulalia Genesca
Summary: Genetic information plays a crucial role in understanding the pathogenesis of T-cell acute lymphoblastic leukemia (T-ALL), but its clinical value remains limited. Few genetic markers are associated with T-ALL patient outcomes, regardless of measurable residual disease (MRD) status. Integrated genomic and clinical data revealed a mutational profile in T-ALL patients, with DNMT3A/N/KRAS/MSH2/U2AF1 gene mutations identifying refractory/resistant patients. The presence of DNMT3A mutations in non-leukemic cells suggests mutational-driven clonal hematopoiesis. The adverse genetic profile, combined with MRD on day +35, allows risk stratification and predicts overall survival (OS) in adult T-ALL.
Article
Medicine, Research & Experimental
Violeta Garcia-Hernandez, David Arambilet, Yolanda Guillen, Teresa Lobo-Jarne, Maria Maqueda, Christos Gekas, Jessica Gonzalez, Arnau Iglesias, Nerea Vega-Garcia, Ines Sentis, Juan L. Trincado, Ian Marquez-Lopez, Holger Heyn, Mireia Camos, Lluis Espinosa, Anna Bigas
Summary: We investigated the role of beta-catenin/CTNNB1 in T-cell Acute Lymphoblastic Leukemia (T-ALL) patients and its involvement in therapy resistance. We identified a specific gene signature regulated by beta-catenin, TCF/LEF factors, and ZBTB33/Kaiso in T-ALL cell lines, which was highly represented in refractory T-ALL patients. We demonstrated the importance of beta-catenin in RNA and protein synthesis in T-ALL and proposed combination treatments involving beta-catenin inhibitors to enhance chemotherapy response and prevent disease relapse in T-ALL patients.
EMBO MOLECULAR MEDICINE
(2023)
Correction
Multidisciplinary Sciences
Ludmil B. Alexandrov, Jaegil Kim, Nicholas J. Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu, Arnoud Boot, Kyle R. Covington, Dmitry A. Gordenin, Erik N. Bergstrom, S. M. Ashiqul Islam, Nuria Lopez-Bigas, Leszek J. Klimczak, John R. McPherson, Sandro Morganella, Radhakrishnan Sabarinathan, David A. Wheeler, Ville Mustonen, Gad Getz, Steven G. Rozen, Michael R. Stratton
Correction
Multidisciplinary Sciences
Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshoj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andres Lanzos, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, Andre Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uuskuela-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jueri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Nuria Lopez-Bigas, Joachim Weischenfeldt, Rameen Beroukhim, Inigo Martincorena, Jakob Skou Pedersen, Gad Getz
Article
Genetics & Heredity
Lise Mangiante, Nicolas Alcala, Alexandra Sexton-Oates, Alex Di Genova, Abel Gonzalez-Perez, Azhar Khandekar, Erik N. Bergstrom, Jaehee Kim, Xiran Liu, Ricardo Blazquez-Encinas, Colin Giacobi, Nolwenn Le Stang, Sandrine Boyault, Cyrille Cuenin, Severine Tabone-Eglinger, Francesca Damiola, Catherine Voegele, Maude Ardin, Marie-Cecile Michallet, Lorraine Soudade, Tiffany M. Delhomme, Arnaud Poret, Marie Brevet, Marie-Christine Copin, Sophie Giusiano-Courcambeck, Diane Damotte, Cecile Girard, Veronique Hofman, Paul Hofman, Jerome Mouroux, Charlotte Cohen, Stephanie Lacomme, Julien Mazieres, Vincent Thomas de Montpreville, Corinne Perrin, Gaetane Planchard, Nathalie Rousseau, Isabelle Rouquette, Christine Sagan, Arnaud Scherpereel, Francoise Thivolet, Jean-Michel Vignaud, Didier Jean, Anabelle Gilg Soit Ilg, Robert Olaso, Vincent Meyer, Anne Boland-Auge, Jean-Francois Deleuze, Janine Altmuller, Peter Nuernberg, Alejandro Ibanez-Costa, Justo P. Castano, Sylvie Lantuejoul, Akram Ghantous, Charles Maussion, Pierre Courtiol, Hector Hernandez-Vargas, Christophe Caux, Nicolas Girard, Nuria Lopez-Bigas, Ludmil B. Alexandrov, Francoise Galateau-Salle, Matthieu Foll, Lynnette Fernandez-Cuesta
Summary: By integrating large-scale whole-genome sequencing data, transcriptomic data, and epigenomic data, researchers found that the current World Health Organization classification only explains 10% of the molecular differences between patients. Instead, the MESOMICS project establishes a morphomolecular classification of malignant pleural mesothelioma based on four dimensions: ploidy, tumor cell morphology, adaptive immune response, and CpG island methylator profile. These findings reveal the interplay between MPM functional biology and its genomic history and provide new insights into the variations observed in the clinical behavior of MPM patients.
Article
Genetics & Heredity
Santiago A. Gonzalez, Nuria J. Lopez-Bigas, Abel A. Gonzalez-Perez
Summary: Chemotherapies can cause DNA damage and specific single nucleotide variants. This study found that platinum-based chemotherapies can also lead to larger mutational footprints, characterized by an increase in chromosomal fragments of copy number. These structural variants induced by platinum-based chemotherapies may have implications for tumor evolution and long-term side effects.
Article
Oncology
Paula Cabello, Sandra Torres-Ruiz, Anna Adam-Artigues, Jaume Fores-Martos, Maria Teresa Martinez, Cristina Hernando, Sandra Zazo, Juan Madoz-Gurpide, Ana Rovira, Octavio Burgues, Federico Rojo, Joan Albanell, Ana Lluch, Begona Bermejo, Juan Miguel Cejalvo, Pilar Eroles
Summary: The expression of miR-146a-5p is associated with the efficacy and survival of HER2-positive breast cancer patients treated with trastuzumab. Increased expression of miR-146a-5p leads to resistance to trastuzumab and enhances cell migration and angiogenesis, promoting cell cycle progression. Furthermore, exosomes from trastuzumab-resistant cells, which contain high levels of miR-146a-5p expression, can transfer resistance properties to other cells.
Article
Multidisciplinary Sciences
Sujath Abbas, Oriol A. Pich, Ginny Devonshire, Shahriar Zamani, Annalise Katz-Summercorn, Sarah Killcoyne, Calvin Cheah, Barbara Nutzinger, Nicola Grehan, Nuria Lopez-Bigas, Paul A. W. Edwards, Elwira M. Fidziukiewicz, Aisling Redmond, Adam C. Freeman, Elizabeth Smyth, Maria O'Donovan, Ahmad Miremadi, Shalini Malhotra, Monika Tripathi, Hannah Coles, Conor Flint, Matthew Eldridge, Sriganesh Jammula, Jim Davies, Charles Crichton, Nick H. Carroll, Richard Hardwick, Peter Safranek, Andrew Hindmarsh, Vijayendran J. Sujendran, Stephen Hayes, Yeng Ang, Andrew R. Sharrocks, Shaun Preston, Izhar Bagwan, Vicki Save, Richard J. E. R. Skipworth, Ted Hupp, J. Robert O'Neill, Olga Tucker, Andrew Beggs, Philippe Taniere, Sonia Puig, Gianmarco J. Contino, Timothy C. Underwood, Robert L. Walker, Ben Grace, Jesper Lagergren, James Gossage, Andrew Davies, Fuju Chang, Ula Mahadeva, Vicky D. Goh, Francesca Ciccarelli, Grant Sanders, Richard Berrisford, David Chan, Ed Cheong, Bhaskar Kumar, L. L. Sreedharan, Simon Parsons, Irshad Soomro, Philip Kaye, John Saunders, Laurence Lovat, Rehan Haidry, Michael Scott, Sharmila Sothi, Suzy B. Lishman, George J. Hanna, Christopher Peters, Krishna Moorthy, Anna Grabowska, Richard Turkington, Damian McManus, Helen D. Coleman, Russell Petty, Freddie C. Bartlett, Rebecca Fitzgerald, Maria Secrier
Summary: The mutational processes of oesophageal adenocarcinoma (OAC) progression from Barrett's Oesophagus have been characterized, with C[T > C/G]T substitution enriched signatures SBS17a/b being dominant. TP53 mutations, increased proliferation, genomic instability, and disease progression are associated with these mutations. Alterations in DNA damage repair pathways, including base excision repair deficiencies, are also linked to poor prognosis.
NATURE COMMUNICATIONS
(2023)
Meeting Abstract
Pathology
J. Connelly, J. Luft, C. J. Anderson, P. Bankhead, F. Connor, P. Flicek, N. Lopez-Bigas, C. A. Semple, D. T. Odom, S. J. Aitken, M. S. Taylor
Meeting Abstract
Environmental Sciences
Craig J. Anderson, Lana Talmane, Juliet Luft, Michael D. Nicolson, John Connelly, Nuria Lopez-Bigas, Paul Flicek, Colin A. Semple, Duncan T. Odom, Sarah J. Aitken, Martin S. Taylor
ENVIRONMENTAL AND MOLECULAR MUTAGENESIS
(2022)
Meeting Abstract
Oncology
J. Connelly, J. Luft, C. J. Anderson, P. Bankhead, F. Connor, P. Flicek, N. Lopez-Bigas, C. A. Semple, D. T. Odom, S. J. Aitken, M. S. Taylor
JOURNAL OF PATHOLOGY
(2022)
Article
Oncology
Ivan Perez-Nunez, Catalina Rozalen, Jose Angel Palomeque, Irene Sangrador, Mariona Dalmau, Laura Comerma, Anna Hernandez-Prat, David Casadevall, Silvia Menendez, Daniel Dan Liu, Minhong Shen, Jordi Berenguer, Irene Rius Ruiz, Raul Pena, Jose Carlos Montanes, M. Mar Alba, Sarah Bonnin, Julia Ponomarenko, Roger R. Gomis, Juan Miguel Cejalvo, Sonia Servitja, Diego M. Marzese, Lluis Morey, Leonie Voorwerk, Joaquin Arribas, Begona Bermejo, Marleen Kok, Lajos Pusztai, Yibin Kang, Joan Albanell, Toni Celia-Terrassa
Summary: LCOR plays a critical role in breast cancer stem cell differentiation and immunotherapy. Immune-checkpoint blockade therapy selects for LCORlow cancer stem cells, disrupting antigen processing/presentation mechanisms and leading to immune escape and therapy resistance. LCOR can activate APM genes independently of IFN signaling, regulating tumor immunogenicity.