Article
Biochemistry & Molecular Biology
Laura Morbiato, Celeste Quaggia, Luca Menilli, Chiara Dalla Torre, Antonio Barbon, Marta De Zotti
Summary: Peptaibols are proteolysis-resistant, membrane-active peptides with stable helical 3D structures. Medium-length peptaibols are of interest for studying peptide-membrane interaction. Electron paramagnetic resonance (EPR) is used for this purpose, but it requires synthesis of spin-labeled medium-length peptaibols.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Chemistry, Applied
Jacqueline Lux, Timon R. Heyn, Ingo Kampen, Karin Schwarz, Julia K. Keppler, Anja Steffen-Heins
Summary: The study developed a method using Site-directed spin labeling (SDSL) to label beta-lactoglobulin (beta-lg) for characterizing amyloid aggregation. The spin labels used did not alter the secondary protein structure and successfully analyzed the aggregation process.
FOOD HYDROCOLLOIDS
(2021)
Article
Neurosciences
Tsuyoshi Hamaguchi, Jee Hee Kim, Akane Hasegawa, Ritsuko Goto, Kenji Sakai, Kenjiro Ono, Yoshinori Itoh, Masahito Yamada
Summary: The study found that exogenous A beta seeds from different A beta pathologies induced A beta deposition in the blood vessels rather than the brain parenchyma, which might be the predominant feature of A beta pathology in iatrogenic transmission cases; Contamination of brain tissues from patients with little A beta pathology could lead to iatrogenic transmission of A beta pathology, emphasizing the urgent need for the development of inactivation methods to prevent such transmission.
ACTA NEUROPATHOLOGICA COMMUNICATIONS
(2021)
Article
Multidisciplinary Sciences
Maa O. Quartey, Jennifer N. K. Nyarko, Jason M. Maley, Jocelyn R. Barnes, Maria A. C. Bolanos, Ryan M. Heistad, Kaeli J. Knudsen, Paul R. Pennington, Josef Buttigieg, Carlos E. De Carvalho, Scot C. Leary, Matthew P. Parsons, Darrell D. Mousseau
Summary: The study suggests that Aβ(1-38) interacts differently with Aβ(1-40) and Aβ(1-42), with the potential to counteract the negative effects of Aβ(1-42) on neurons and alleviate related phenotypes.
SCIENTIFIC REPORTS
(2021)
Article
Biochemistry & Molecular Biology
Nurmaya Effendi, Kenji Mishiro, Kazuhiro Shiba, Seigo Kinuya, Kazuma Ogawa
Summary: This study aimed to develop peptide-based imaging probes for PDGFRβ and examined the effects of different linkers on their properties. The in vivo evaluation showed certain probes with higher cell uptake rates and stability, but insufficient tumor accumulation, calling for further probe modification for better in vivo imaging.
Article
Biochemistry & Molecular Biology
Clemence Cheignon, Fabrice Collin, Laurent Sabater, Christelle Hureau
Summary: The study investigates the impact of oxidative stress on the assembly properties of the amyloid-beta (Aβ) peptide in Alzheimer's disease. Oxidized Aβ displayed smaller and ill-defined assemblies compared to the non-oxidized counterpart. It was able to slow down the formation of Aβ fibrils and formed weakly-structured aggregates in the presence of copper or zinc ions.
Article
Chemistry, Multidisciplinary
Zhongju Ye, Zhao-Jun Yan, Chenhong Zhang, Jun-Li Hou, Shijing Yue, Lehui Xiao
Summary: Anti-A beta therapy has been the main focus in clinical trials for AD prevention and treatment. This study introduced a new strategy using a charged tubular supramolecule to suppress A beta fibrillation, showing efficient inhibition of A beta(40) fibrillation by CTS-A at a very low inhibitor:peptide molar ratio (1:10) and a reduced cytotoxic effect of A beta peptides post-inhibition or disaggregation. The organized supramolecular structure enhances amyloid fibrillar modulation, offering a new approach for AD treatment using supramolecules.
Article
Engineering, Environmental
Falin He, Xiangxiang Li, Chengqian Huo, Shanshan Chu, Zhihan Cui, Yuze Li, Jingqiang Wan, Rutao Liu
Summary: This study investigated the toxic effects of fluorene on Eisenia fetida and identified its underlying mechanisms. Results showed that fluorene caused lethality and oxidative stress on E. fetida, leading to DNA damage, protein carbonylation, and lipid peroxidation. Fluorene exposure also disrupted the reproductive system and growth of E. fetida and affected the expression of genes related to oxidative stress, growth, and reproduction. High-dose and long-term exposure had more severe poisoning effects on earthworms, and E. fetida coelomocyte DNA was highly affected by fluorene stress. These findings provide valuable insights into the ecological risks associated with fluorene-contaminated soil.
JOURNAL OF HAZARDOUS MATERIALS
(2022)
Article
Chemistry, Multidisciplinary
Lisa Ross, Julius Reitemeier, Farhad Ghalami, Wen-Shan Zhang, Jurgen H. Gross, Frank Rominger, Sven M. Elbert, Rasmus Schroeder, Marcus Elstner, Michael Mastalerz
Summary: In this study, the solution and solid-state behavior of two-dimensionally triptycene end-capped QPPs were investigated. QPPs were synthesized through condensation reactions with pyrene-based tetraketone and ortho-diamines, resulting in the formation of dimers in solution, supported by MALDI-TIMS-TOF-MS analysis. Single-crystal X-ray analysis showed a short p-p distance of 3.3-3.4 angstrom and a perfect shape match during the dimerization of triptycene end-capped QPPs, indicating its potential as a synthon for crystal engineering.
CHINESE JOURNAL OF CHEMISTRY
(2023)
Article
Chemistry, Physical
Xin-Yue Zhou, Tian-Qi Hui, Ying-Ying Han, Xin-Tong Huang, Xiao-Nan Jiang, Cui Liu, Jie Yan
Summary: Fluorene-based compounds play a unique role in photoluminescence and electroluminescent materials. Novel compounds 2,7-di(quinol-4-yl)-9,9-dimethylfluorene (F4) and 2,7-di(indole-5-yl)-9,9-dimethyl fluorene (F5) were found to have better fluorescence characteristics and can be used as sensors. F4 showed good selectivity and sensitivity to TNP and Fe3+, and the fluorescence quenching mechanism of F4 with TNP was studied by theoretical calculation.
JOURNAL OF MOLECULAR STRUCTURE
(2021)
Article
Chemistry, Medicinal
Chikako Shibazaki, Okishi Mashita, Kyoko Takahashi, Shigeo Nakamura, Tadahiko Mashino, Tomoyuki Ohe
Summary: The study aimed to develop a trapping reagent, Dap-Dan, for assessing the risk of reactive acyl glucuronides. Dap-Dan showed higher trapping accuracy compared to other reported reagents, effectively capturing acyl glucuronides with higher toxicity risks.
CHEMICAL RESEARCH IN TOXICOLOGY
(2021)
Article
Chemistry, Physical
Toshiaki Taira, Satohiro Yanagisawa, Tomohiro Imura
Summary: This study investigated the influence of different organic and inorganic counter-cations on the self-assembly properties of the cyclic lipopeptide surfactin (SF), revealing that more hydrophobic counter-cations resulted in higher critical aggregation concentrations (CACs). Additionally, it was found that more hydrophobic organic counter-cations could enhance intramolecular and intermolecular hydrogen bonding to promote SF self-assembly in aqueous solution. Furthermore, mixtures of SF-Na and alkylammonium bromides with different alkyl chain lengths produced stable colloidal suspensions consisting of vesicles with a diameter around 100 nm.
COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS
(2021)
Article
Chemistry, Organic
Michael D. Delost, Jon T. Njardarson
Summary: We present novel mild approaches to trisubstituted trifluoromethylthiolated (SCF3) aziridines and cyclo-propanes through Darzens inspired protocols. These anionic annulations, which have been rarely explored previously, yield products with appealing features that make them valuable building blocks for synthesis platforms. Specifically, trisubstituted acetophenone nucleophiles containing SCF3 and bromine substituents in their a position undergo [2 + 1] annulations with vinyl ketones and tosyl-protected imines under mild reaction conditions.
Article
Biochemistry & Molecular Biology
Shunxi Zhang, Jiahe Zhao, Zhihuai Bai, Lina Luo, Fan Wu, Baolong Li, Yujuan Shan
Summary: The study suggests that sulforaphane (SFN) may have potential therapeutic effects on Alzheimer's disease by improving AD symptoms through Nrf2 activation. SFN reduced escape latency and increased target-zone frequency in rats, improved pathological morphology and neuron numbers in the hippocampus, and modulated antioxidant reactions by upregulating thioredoxin and glutathione content, along with Nrf2 protein expression, while reducing A beta content and ROS levels. Additionally, SFN's inhibitory effects on ROS and A beta production were partially weakened after silencing Nrf2 with SiRNA.
Article
Chemistry, Physical
Tongtong Sun, Yonghai Feng, Jiali Peng, Yun Hao, Liwei Zhang, Lei Liu
Summary: This study proposed and verified an alternative strategy for enhancing the catalytic activity of 4-nitrophenol reduction by using amyloid peptide self-assembly as a template for peptide-metal nanocatalysts. The amyloid peptide self-assembled membrane exhibited better enhanced catalytic activity compared to peptide nanofibers as the template.
JOURNAL OF COLLOID AND INTERFACE SCIENCE
(2022)
Article
Biophysics
Jean K. Chung, William Y. C. Huang, Catherine B. Carbone, Laura M. Nocka, Atul N. Parikh, Ronald D. Vale, Jay T. Groves
Summary: Lipid miscibility phase separation and protein condensation phase transitions are important organizational principles in cells. By reconstituting LAT:Grb2:SOS protein condensation on giant unilamellar vesicles, it is shown that the assembly of protein condensates can drive lipid phase separation. This process is controlled by tyrosine phosphorylation on LAT and leads to the localization of downstream signaling molecules into the protein condensates.
BIOPHYSICAL JOURNAL
(2021)
Article
Biophysics
Viviane N. Ngassam, Wan-Chih Su, Douglas L. Gettel, Yawen Deng, Zexu Yang, Neven Wang-Tomic, Varun P. Sharma, Sowmya Purushothaman, Atul N. Parikh
Summary: A study found distinct differences in the way single giant unilamellar vesicles (GUVs) rupture and the dynamics of their burst-resesl processes on hydrophobic and solid hydrophilic surfaces. The competition process in these rupture events determines the course of the topological transition under surface-energy-dependent adhesion.
BIOPHYSICAL JOURNAL
(2021)
Article
Nanoscience & Nanotechnology
Shukun Shen, Yiyun Wang, Jingxuan Dong, Rui Zhang, Atul Parikh, Jian-Gang Chen, Daodao Hu
Summary: The study has successfully designed a hybrid construct inspired by the thylakoid membrane structure, inserting chlorophyll into the membrane and forming a TiO2 nanoshell. The hybrid liposomes exhibit clear photoactivity in visible light-harvesting and oxygen release, showing potential for developing artificial photosynthetic materials with efficient photocatalytic oxygen production.
ACS APPLIED MATERIALS & INTERFACES
(2021)
Article
Biochemistry & Molecular Biology
Annapoorna R. Sapuri-Butti, Limin Wang, Sarada D. Tetali, John C. Rutledge, Atul N. Parikh
Summary: In this study, the preferential lipid partitioning of different lipoproteins and their lipolysis products were investigated using supported phospholipid raft membrane patterns. It was observed that VLDL and LDL showed a clear preference for interacting with raft patterns, while TGRL and CM displayed different interaction patterns with a slightly elevated preference for raft patterns and a greater affinity for phospholipid patterns, respectively. These findings suggest that VLDL and LDL may associate with cholesterol and sphingomyelin rich lipid micro-domains during early interactions with endothelial cells, potentially leading to atherosclerosis.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2021)
Article
Chemistry, Multidisciplinary
James C. S. Ho, Wan-Chih Su, Xuan Chun Wang, Atul N. Parikh, Bo Liedberg
Summary: When certain amphiphiles encounter water, they form fingerlike tubular protrusions called myelin figures. In mixtures of unsaturated lipid, cholesterol, and sphingomyelin, myelins break symmetry and create gradients of cholesterol and unsaturated lipid, resulting in unusual morphologies. These findings suggest that kinetic differences in hydration characteristics dictate the behavior of lipid mixtures.
Article
Chemistry, Multidisciplinary
Yacine Mazouzi, Fadoua Sallem, Francesca Farina, Alexis Loiseau, Natayme Rocha Tartaglia, Morgane Fontaine, Atul Parikh, Michele Salmain, Christian Neri, Souhir Boujday
Summary: This study combines quartz crystal microbalance with dissipation (QCM-D) and nanoplasmonic sensing (NPS) to provide a facile method for tracking the viscoelastic properties of small EVs, analyzing EVs related to the Huntington's disease gene. The results suggest that the mass and viscoelastic dissipation of EVs can serve as potent biomarkers.
Article
Chemistry, Multidisciplinary
Bradley S. Harris, Yuqi Huang, Arpad Karsai, Wan-Chih Su, Pallavi D. Sambre, Atul N. Parikh, Gang-yu Liu, Roland Faller
Summary: This study uses molecular dynamics simulations to investigate the assembly of POPC molecules under spatial confinement and explores the impact of surface polarity on molecular assembly. The results show that solvent evaporation leads to the formation of liquid-crystalline bilayers, with surface polarity affecting the orientation of the bilayers.
Article
Chemistry, Multidisciplinary
Daniel J. Speer, James C. S. Ho, Atul N. Parikh
Summary: This study investigates the solubilization process of the myelin figure by a zwitterionic detergent and reveals that it occurs in a multistep manner, producing morphologically distinct intermediates. These intermediates include coiling, thinning, and detachment or retraction. The appearance of these intermediates suggests a complex free-energy landscape characterizing myelin solubilization.
Article
Chemistry, Multidisciplinary
Shu Hui Hiew, Yang Lu, Hao Han, Rui A. Goncalves, Serena Rosa Alfarano, Raffaele Mezzenga, Atul N. Parikh, Yuguang Mu, Ali Miserez
Summary: Modular peptide repeats in load-bearing proteins often have conserved sequences and give specific mechanical properties to materials. This study identified the GX8 peptide with the sequence GLYGGYGX in various organisms. By mutating the X residue, GX8 can self-assemble into different structures with different properties, from liquid-like coacervate microdroplets to hydrogels to stiff solid materials. The study highlights the role of pi-pi stacking, hydrophobic interactions, and hydrogen bonding in driving the self-assembly and mechanical response of GX8 peptides.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2023)
Article
Biotechnology & Applied Microbiology
Wen Jie Melvin Liew, Yee Shan Wong, Atul N. Parikh, Subbu S. Venkatraman, Ye Cao, Bertrand Czarny
Summary: Lipid-based nanoparticulate formulations are commonly used for encapsulation and sustained release of hydrophilic drugs, but they struggle with high initial burst release. Nanolipogel (NLG) shows promise as a system for encapsulating and delivering hydrophilic drugs while suppressing initial burst release. However, there is limited understanding of the drug release mechanism from NLGs.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY
(2023)
Article
Chemistry, Physical
Daniel J. J. Speer, Marta Salvador-Castell, Yuqi Huang, Gang-Yu Liu, Sunil K. K. Sinha, Atul N. N. Parikh
Summary: The hydrophobic effect drives the self-assembly of amphiphilic structures such as lamellar and micellar mesophases. This study investigates the structural organization of mixtures of phospholipid POPC and two zwitterionic surfactants, DDAPS and O-Lyso-PC. The results reveal the assembly of mixed mesophases with varied structural trends, and the chemical specificity of the surfactant-lipid interactions plays a key role in modulating their properties.
JOURNAL OF PHYSICAL CHEMISTRY B
(2023)
Article
Chemistry, Multidisciplinary
Wan-Chih Su, James C. S. Ho, Douglas L. Gettel, Andrew T. Rowland, Christine D. Keating, Atul N. Parikh
Summary: A study investigates the dynamics of liquid-liquid phase separation (LLPS) in synthetic vesicles, finding that the relaxation process towards equilibrium is modulated by the coarsening of the droplet phase and the interaction with the vesicle membrane boundary. The study also demonstrates that LLPS within the vesicles can affect the composition of the membrane, suggesting a potential mechanism for dynamic regulation and communication of LLPS inside living cells.
Meeting Abstract
Ophthalmology
Brian C. Leonard, Sangwan Park, Daniel M. Albert, Charles A. O'Neill, Thomas R. Gadek, Atul N. Parikh
INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE
(2022)
Meeting Abstract
Biophysics
Pallavi D. Sambre, Atul N. Parikh
BIOPHYSICAL JOURNAL
(2022)
Proceedings Paper
Materials Science, Multidisciplinary
Annapoorna R. Sapuri-Butti, Ravi Chandra Butti, Atul N. Parikh
Summary: The study focused on the curvature-induced phase separation of unsaturated and saturated lipids using fluorescence microscopy. Supported lipid membranes of varying compositions were prepared on PDMS substrates with different curvature patterns, which led to spontaneous self-sorting of lipids on patterned surfaces. The migration of lipids to specific curvature regions was observed through fluorescence recovery after photobleaching (FRAP) studies.
MATERIALS TODAY-PROCEEDINGS
(2021)