Imbalanced Multi-Modal Multi-Label Learning for Subcellular Localization Prediction of Human Proteins with Both Single and Multiple Sites

Virus-mPLoc: A Fusion Classifier for Viral Protein Subcellular Location Prediction by Incorporating Multiple Sites

(2012) Hong-Bin Shen et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

A novel method for predicting protein subcellular localization based on pseudo amino acid composition

(2011) Junwei Ma et al.   BMB Reports

Gene ontology based transfer learning for protein subcellular localization

(2011) Suyu Mei et al.   BMC BIOINFORMATICS

Robust prediction of protein subcellular localization combining PCA and WSVMs

(2011) Jiang Tian et al.   COMPUTERS IN BIOLOGY AND MEDICINE

iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites

(2011) Xuan Xiao et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine

(2011) Hassan Mohabatkar et al.   JOURNAL OF THEORETICAL BIOLOGY

Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization

(2011) Suyu Mei   JOURNAL OF THEORETICAL BIOLOGY

iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites

(2011) Zhi-Cheng Wu et al.   Molecular BioSystems

iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites

(2011) Kuo-Chen Chou et al.   Molecular BioSystems

Gaussian kernel optimization: Complex problem and a simple solution

(2011) Jiang-Bo Yin et al.   NEUROCOMPUTING

iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins

(2011) Kuo-Chen Chou et al.   PLoS One

Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties

(2011) Lele Hu et al.   PLoS One

Prediction of Antimicrobial Peptides Based on Sequence Alignment and Feature Selection Methods

(2011) Ping Wang et al.   PLoS One

A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single and Multiple Sites

(2011) Xuan Xiao et al.   PLoS One

Predicting Transcriptional Activity of Multiple Site p53 Mutants Based on Hybrid Properties

(2011) Tao Huang et al.   PLoS One

Prediction of Body Fluids where Proteins are Secreted into Based on Protein Interaction Network

(2011) Le-Le Hu et al.   PLoS One

NR-2L: A Two-Level Predictor for Identifying Nuclear Receptor Subfamilies Based on Sequence-Derived Features

(2011) Pu Wang et al.   PLoS One

Classification and Analysis of Regulatory Pathways Using Graph Property, Biochemical and Physicochemical Property, and Functional Property

(2011) Tao Huang et al.   PLoS One

iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model

(2011) Wei-Zhong Lin et al.   PLoS One

Predicting Apoptosis Protein Subcellular Location with PseAAC by Incorporating Tripeptide Composition

(2011) Bo Liao et al.   PROTEIN AND PEPTIDE LETTERS

Going from where to why—interpretable prediction of protein subcellular localization

(2010) Sebastian Briesemeister et al.   BIOINFORMATICS

Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition

(2010) Lei Chen et al.   BMC BIOINFORMATICS

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions

(2010) Xuan Xiao et al.   Molecular BioSystems

Analysis of Protein Pathway Networks Using Hybrid Properties

(2010) Lei Chen et al.   MOLECULES

Predicting Drug-Target Interaction Networks Based on Functional Groups and Biological Features

(2010) Zhisong He et al.   PLoS One

Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization

(2010) Kuo-Chen Chou et al.   PLoS One

Analysis and Prediction of the Metabolic Stability of Proteins Based on Their Sequential Features, Subcellular Locations and Interaction Networks

(2010) Tao Huang et al.   PLoS One

A New Method for Predicting the Subcellular Localization of Eukaryotic Proteins with Both Single and Multiple Sites: Euk-mPLoc 2.0

(2010) Kuo-Chen Chou et al.   PLoS One

Prediction of Subcellular Location of Apoptosis Proteins Using Pseudo Amino Acid Composition: An Approach from Auto Covariance Transformation

(2010) Taigang Liu et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Cyclin Proteins Using Chous Pseudo Amino Acid Composition

(2010) Hassan Mohabatkar   PROTEIN AND PEPTIDE LETTERS

Prediction of subcellular locations of proteins: Where to proceed?

(2010) Kenichiro Imai et al.   PROTEOMICS

A top-down approach to enhance the power of predicting human protein subcellular localization: Hum-mPLoc 2.0

(2009) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY

Protein subcellular localization prediction of eukaryotes using a knowledge-based approach

(2009) Hsin-Nan Lin et al.   BMC BIOINFORMATICS

Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach

(2009) Yu-hong Zeng et al.   JOURNAL OF THEORETICAL BIOLOGY

Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses

(2009) Maryam Esmaeili et al.   JOURNAL OF THEORETICAL BIOLOGY

Using pseudo amino acid composition to predict protein subcellular location: approached with amino acid composition distribution

(2008) J.-Y. Shi et al.   AMINO ACIDS

ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information

(2008) Kuo-Chen Chou et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

DBMLoc: a Database of proteins with multiple subcellular localizations

(2008) Song Zhang et al.   BMC BIOINFORMATICS

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition

(2008) D.N. Georgiou et al.   JOURNAL OF THEORETICAL BIOLOGY

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols

Using the Concept of Chous Pseudo Amino Acid Composition to Predict Apoptosis Proteins Subcellular Location: An Approach by Approximate Entropy

(2008) Xiaoying Jian et al.   PROTEIN AND PEPTIDE LETTERS

Predicting Protein Subcellular Location Using Chous Pseudo Amino Acid Composition and Improved Hybrid Approach

(2008) Feng-Min Li et al.   PROTEIN AND PEPTIDE LETTERS

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY