Improving Power of Genome-Wide Association Studies with Weighted False Discovery Rate Control and Prioritized Subset Analysis
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Title
Improving Power of Genome-Wide Association Studies with Weighted False Discovery Rate Control and Prioritized Subset Analysis
Authors
Keywords
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Journal
PLoS One
Volume 7, Issue 4, Pages e33716
Publisher
Public Library of Science (PLoS)
Online
2012-04-10
DOI
10.1371/journal.pone.0033716
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- (2010) L. G. Petrich de Marquesini et al. DIABETOLOGIA
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- (2010) M Maziarz et al. GENES AND IMMUNITY
- Association of PTPN22 haplotypes with type 1 diabetes in the Japanese population
- (2010) Matsuo Taniyama et al. HUMAN IMMUNOLOGY
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