Knowledge-Based Reconstruction of mRNA Transcripts with Short Sequencing Reads for Transcriptome Research
Published 2012 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Knowledge-Based Reconstruction of mRNA Transcripts with Short Sequencing Reads for Transcriptome Research
Authors
Keywords
RNA sequencing, Exon mapping, Sequence databases, Gene expression, Messenger RNA, Transcriptome analysis, Gene sequencing, Genome sequencing
Journal
PLoS One
Volume 7, Issue 2, Pages e31440
Publisher
Public Library of Science (PLoS)
Online
2012-02-02
DOI
10.1371/journal.pone.0031440
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Identification of novel transcripts in annotated genomes using RNA-Seq
- (2011) A. Roberts et al. BIOINFORMATICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Human transcriptome array for high-throughput clinical studies
- (2011) Weihong Xu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Understanding mechanisms underlying human gene expression variation with RNA sequencing
- (2010) Joseph K. Pickrell et al. NATURE
- Detection of splice junctions from paired-end RNA-seq data by SpliceMap
- (2010) K. F. Au et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2011
- (2010) P. Flicek et al. NUCLEIC ACIDS RESEARCH
- The Sequence Read Archive
- (2010) R. Leinonen et al. NUCLEIC ACIDS RESEARCH
- Statistical inferences for isoform expression in RNA-Seq
- (2009) Hui Jiang et al. BIOINFORMATICS
- Identifiability of isoform deconvolution from junction arrays and RNA-Seq
- (2009) David Hiller et al. BIOINFORMATICS
- QSRA – a quality-value guided de novo short read assembler
- (2009) Douglas W Bryant et al. BMC BIOINFORMATICS
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
- (2009) Joshua Z Levin et al. GENOME BIOLOGY
- SeqMap: mapping massive amount of oligonucleotides to the genome
- (2008) H. Jiang et al. BIOINFORMATICS
- ALLPATHS: De novo assembly of whole-genome shotgun microreads
- (2008) J. Butler et al. GENOME RESEARCH
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now