ReCombine: A Suite of Programs for Detection and Analysis of Meiotic Recombination in Whole-Genome Datasets

Genome-wide survey of post-meiotic segregation during yeast recombination

(2011) Eugenio Mancera et al.   GENOME BIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

SEG-Map: A Novel Software for Genotype Calling and Genetic Map Construction from Next-generation Sequencing

(2010) Qiang Zhao et al.   Rice

Array-based genotyping in S.cerevisiae using semi-supervised clustering

(2009) Richard Bourgon et al.   BIOINFORMATICS

Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae

(2009) Ji Qi et al.   BMC GENOMICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Global Analysis of the Meiotic Crossover Landscape

(2008) Stacy Y. Chen et al.   DEVELOPMENTAL CELL

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

(2008) Eugenio Mancera et al.   NATURE

The Long March: A Sample Preparation Technique that Enhances Contig Length and Coverage by High-Throughput Short-Read Sequencing

(2008) Katherine Sorber et al.   PLoS One