Intronic L1 Retrotransposons and Nested Genes Cause Transcriptional Interference by Inducing Intron Retention, Exonization and Cryptic Polyadenylation

Distributions of Transposable Elements Reveal Hazardous Zones in Mammalian Introns

(2011) Ying Zhang et al.   PLoS Computational Biology

Epigenetic Control of Retrotransposon Expression in Human Embryonic Stem Cells

(2010) A. Macia et al.   MOLECULAR AND CELLULAR BIOLOGY

Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation

(2010) Magali Naville et al.   GENOME BIOLOGY

An Overview of Nested Genes in Eukaryotic Genomes

(2009) Anuj Kumar   EUKARYOTIC CELL

Long noncoding RNAs: functional surprises from the RNA world

(2009) J. E. Wilusz et al.   GENES & DEVELOPMENT

Unlocking the secrets of the genome

(2009) Susan E. Celniker et al.   NATURE

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

Direct Detection of Abortive RNA Transcripts in Vivo

(2009) S. R. Goldman et al.   SCIENCE

Many LINE1 elements contribute to the transcriptome of human somatic cells

(2009) Sanjida H Rangwala et al.   GENOME BIOLOGY

Orientation-Dependent Regulation of Integrated HIV-1 Expression by Host Gene Transcriptional Readthrough

(2008) Yefei Han et al.   Cell Host & Microbe

Alternative splicing and expression of human and mouse NFAT genes

(2008) Hanna Vihma et al.   GENOMICS

Alternative splicing of Alu exons—two arms are better than one

(2008) Nurit Gal-Mark et al.   NUCLEIC ACIDS RESEARCH

Nested genes and increasing organizational complexity of metazoan genomes

(2008) Raquel Assis et al.   TRENDS IN GENETICS

Intronic Alus Influence Alternative Splicing

(2008) Galit Lev-Maor et al.   PLoS Genetics