pubmed2ensembl: A Resource for Mining the Biological Literature on Genes

Annotating genes and genomes with DNA sequences extracted from biomedical articles

(2011) Maximilian Haeussler et al.   BIOINFORMATICS

GeneTUKit: a software for document-level gene normalization

(2011) M. Huang et al.   BIOINFORMATICS

Concept-based query expansion for retrieving gene related publications from MEDLINE

(2010) Sérgio Matos et al.   BMC BIOINFORMATICS

LINNAEUS: A species name identification system for biomedical literature

(2010) Martin Gerner et al.   BMC BIOINFORMATICS

A MOD(ern) perspective on literature curation

(2010) Jodi Hirschman et al.   MOLECULAR GENETICS AND GENOMICS

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila

(2010) S. M. Gallo et al.   NUCLEIC ACIDS RESEARCH

The European Nucleotide Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

(2010) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

Entrez Gene: gene-centered information at NCBI

(2010) D. Maglott et al.   NUCLEIC ACIDS RESEARCH

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

The UCSC Genome Browser database: update 2011

(2010) P. A. Fujita et al.   NUCLEIC ACIDS RESEARCH

bioDBnet: the biological database network

(2009) Uma Mudunuri et al.   BIOINFORMATICS

BioMart – biological queries made easy

(2009) Damian Smedley et al.   BMC GENOMICS

GoGene: gene annotation in the fast lane

(2009) C. Plake et al.   NUCLEIC ACIDS RESEARCH

Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases

(2009) T. Imanishi et al.   NUCLEIC ACIDS RESEARCH

PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning

(2009) Y. Yoshida et al.   NUCLEIC ACIDS RESEARCH

PosMed-plus: An Intelligent Search Engine that Inferentially Integrates Cross-Species Information Resources for Molecular Breeding of Plants

(2009) Yuko Makita et al.   PLANT AND CELL PHYSIOLOGY

Inter-species normalization of gene mentions with GNAT

(2008) J. Hakenberg et al.   BIOINFORMATICS

Integrating biological data – the Distributed Annotation System

(2008) Andrew M Jenkinson et al.   BMC BIOINFORMATICS

Overview of BioCreative II gene normalization

(2008) Alexander A Morgan et al.   GENOME BIOLOGY

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge

(2008) Martin Krallinger et al.   GENOME BIOLOGY

Linking genes to literature: text mining, information extraction, and retrieval applications for biology

(2008) Martin Krallinger et al.   GENOME BIOLOGY