Bound Water at Protein-Protein Interfaces: Partners, Roles and Hydrophobic Bubbles as a Conserved Motif

Docking glycosaminoglycans to proteins: analysis of solvent inclusion

(2011) Sergey A. Samsonov et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Isoindolinone Inhibitors of the Murine Double Minute 2 (MDM2)-p53 Protein−Protein Interaction: Structure−Activity Studies Leading to Improved Potency

(2011) Ian R. Hardcastle et al.   JOURNAL OF MEDICINAL CHEMISTRY

Ligand binding to protein-binding pockets with wet and dry regions

(2011) L. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A structure-based benchmark for protein-protein binding affinity

(2011) Panagiotis L. Kastritis et al.   PROTEIN SCIENCE

Amyloid in neurodegenerative diseases: Friend or foe?

(2011) Katie J. Wolfe et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Assessing Energetic Contributions to Binding from a Disordered Region in a Protein−Protein Interaction,

(2010) Sangwoo Cho et al.   BIOCHEMISTRY

Hydrophobicity - Shake Flasks, Protein Folding and Drug Discovery

(2010) Aurijit Sarkar et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Protein-Protein Interactions and Cancer: Targeting the Central Dogma

(2010) Amanda L. Garner et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Calculations of the Free Energy of Interaction of the c-Fos−c-Jun Coiled Coil: Effects of the Solvation Model and the Inclusion of Polarization Effects

(2010) Zhili Zuo et al.   Journal of Chemical Information and Modeling

The Subunit Interfaces of Weakly Associated Homodimeric Proteins

(2010) Sucharita Dey et al.   JOURNAL OF MOLECULAR BIOLOGY

Enhanced interrogation: emerging strategies for cell signaling inhibition

(2010) Rong Huang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The structural and energetic basis for high selectivity in a high-affinity protein-protein interaction

(2010) N. A. G. Meenan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new method for revealing correlated mutations under the structural and functional constraints in proteins

(2009) Byung-Chul Lee et al.   BIOINFORMATICS

Inhibition of protein–protein interactions using designed molecules

(2009) Andrew J. Wilson   CHEMICAL SOCIETY REVIEWS

Protein-Protein Interaction Inhibition (2P2I): Fewer and Fewer Undruggable Targets

(2009) Stephane Betzi et al.   COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING

Therapeutic peptides for cancer therapy. Part I – peptide inhibitors of signal transduction cascades

(2009) Gene L Bidwell et al.   Expert Opinion on Drug Delivery

Docking Ligands into Flexible and Solvated Macromolecules. 4. Are Popular Scoring Functions Accurate for this Class of Proteins?

(2009) Pablo Englebienne et al.   Journal of Chemical Information and Modeling

Web application for studying the free energy of binding and protonation states of protein–ligand complexes based on HINT

(2009) Alexander S. Bayden et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

The role of conserved water molecules in the catalytic domain of protein kinases

(2009) James D. R. Knight et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A novel and efficient tool for locating and characterizing protein cavities and binding sites

(2009) Ashutosh Tripathi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Analysis of the impact of solvent on contacts prediction in proteins

(2009) Sergey A Samsonov et al.   BMC STRUCTURAL BIOLOGY

Amyloidogenic Regions and Interaction Surfaces Overlap in Globular Proteins Related to Conformational Diseases

(2009) Virginia Castillo et al.   PLoS Computational Biology

Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions

(2008) D. W. Ritchie et al.   BIOINFORMATICS

Energy-based prediction of amino acid-nucleotide base recognition

(2008) Anna Marabotti et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Robust Classification of “Relevant” Water Molecules in Putative Protein Binding Sites

(2008) Alessio Amadasi et al.   JOURNAL OF MEDICINAL CHEMISTRY

A molecular dynamics approach to study the importance of solvent in protein interactions

(2008) Sergey Samsonov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein–protein interaction and quaternary structure

(2008) Joël Janin et al.   QUARTERLY REVIEWS OF BIOPHYSICS

De Novo Computational Design of Retro-Aldol Enzymes

(2008) L. Jiang et al.   SCIENCE

On the Contribution of Water-Mediated Interactions to Protein-Complex Stability†

(2007) Dana Reichmann et al.   BIOCHEMISTRY