Sources of Signal in 62 Protein-Coding Nuclear Genes for Higher-Level Phylogenetics of Arthropods

The mitochondrial genome of Colossendeis megalonyx supports a basal position of Colossendeidae within the Pycnogonida

(2011) Lars Dietz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The chelifores of sea spiders (Arthropoda, Pycnogonida) are the appendages of the deutocerebral segment

(2010) Georg Brenneis et al.   EVOLUTION & DEVELOPMENT

Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships

(2010) K. S. Pick et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

(2010) K. Meusemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics

(2010) HOJUN SONG et al.   SYSTEMATIC ENTOMOLOGY

Arthropod phylogeny revisited, with a focus on crustacean relationships

(2009) Stefan Koenemann et al.   ARTHROPOD STRUCTURE & DEVELOPMENT

Arthropod phylogeny: An overview from the perspectives of morphology, molecular data and the fossil record

(2009) Gregory D. Edgecombe   ARTHROPOD STRUCTURE & DEVELOPMENT

Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study

(2009) Jerome C Regier et al.   BMC EVOLUTIONARY BIOLOGY

On the phylogenetic position of insects in the Pancrustacea clade

(2009) V. V. Aleshin et al.   MOLECULAR BIOLOGY

Large-Scale Parsimony Analysis of Metazoan Indels in Protein-Coding Genes

(2009) F. Belinky et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hemocyanin Suggests a Close Relationship of Remipedia and Hexapoda

(2009) B. Ertas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene Sampling Can Bias Multi-Gene Phylogenetic Inferences: The Relationship between Red Algae and Green Plants as a Case Study

(2009) Y. Inagaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)

(2009) Falko Roeding et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The origin and evolution of arthropods

(2009) Graham E. Budd et al.   NATURE

Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics

(2009) Bryan Kolaczkowski et al.   PLoS One

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

(2009) V. Hampl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Statistical Comparison of Nucleotide, Amino Acid, and Codon Substitution Models for Evolutionary Analysis of Protein-Coding Sequences

(2009) Tae-Kun Seo et al.   SYSTEMATIC BIOLOGY

Nonstationary Evolution and Compositional Heterogeneity in Beetle Mitochondrial Phylogenomics

(2009) Nathan C. Sheffield et al.   SYSTEMATIC BIOLOGY

Phylogenetic Inference Using Whole Genomes

(2008) Bruce Rannala et al.   Annual Review of Genomics and Human Genetics

Saturation and base composition bias explain phylogenomic conflict in Plasmodium

(2008) Liliana M. Dávalos et al.   GENOMICS

The Phylogenetic Informativeness of Nucleotide and Amino Acid Sequences for Reconstructing the Vertebrate Tree

(2008) Jeffrey P. Townsend et al.   JOURNAL OF MOLECULAR EVOLUTION

Spatial and Temporal Heterogeneity in Nucleotide Sequence Evolution

(2008) S. Whelan   MOLECULAR BIOLOGY AND EVOLUTION

Uncorrected Nucleotide Bias in mtDNA Can Mimic the Effects of Positive Darwinian Selection

(2008) Mihai Albu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Toward Resolving Deep Neoaves Phylogeny: Data, Signal Enhancement, and Priors

(2008) R. C. Pratt et al.   MOLECULAR BIOLOGY AND EVOLUTION

A multi criterion approach for the selection of optimal outgroups in phylogeny: Recovering some support for Mandibulata over Myriochelata using mitogenomics

(2008) Omar Rota-Stabelli et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

Evaluating the robustness of phylogenetic methods to among-site variability in substitution processes

(2008) M. T Holder et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomic evidence for multiple losses of flight in ratite birds

(2008) J. Harshman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The archaebacterial origin of eukaryotes

(2008) C. J. Cox et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synonymous Substitutions Substantially Improve Evolutionary Inference from Highly Diverged Proteins

(2008) Tae-Kun Seo et al.   SYSTEMATIC BIOLOGY

Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence

(2008) Jerome C. Regier et al.   SYSTEMATIC BIOLOGY

Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci

(2008) Chenhong Li et al.   SYSTEMATIC BIOLOGY