Genomic Signatures of Strain Selection and Enhancement in Bacillus atrophaeus var. globigii, a Historical Biowarfare Simulant

Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations

(2010) Tim F Cooper et al.   BMC EVOLUTIONARY BIOLOGY

Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA

(2009) Kathryn E. Holt et al.   BIOINFORMATICS

Short-Term Signatures of Evolutionary Change in the Salmonella enterica Serovar Typhimurium 14028 Genome

(2009) T. Jarvik et al.   JOURNAL OF BACTERIOLOGY

Genomic Sequencing Reveals Regulatory Mutations and Recombinational Events in the Widely Used MC4100 Lineage of Escherichia coli K-12

(2009) T. Ferenci et al.   JOURNAL OF BACTERIOLOGY

Tracing Ancestors and Relatives of Escherichia coli B, and the Derivation of B Strains REL606 and BL21(DE3)

(2009) Patrick Daegelen et al.   JOURNAL OF MOLECULAR BIOLOGY

Anthrax Letters: Personal Exposure, Building Contamination, and Effectiveness of Immediate Mitigation Measures

(2009) Bill Kournikakis et al.   JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL HYGIENE

Rapid quantification of single-nucleotide mutations in mixed influenza A viral populations using allele-specific mixture analysis

(2009) Cindy M. Liu et al.   JOURNAL OF VIROLOGICAL METHODS

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

The Secret Life of the Anthrax Agent Bacillus anthracis: Bacteriophage-Mediated Ecological Adaptations

(2009) Raymond Schuch et al.   PLoS One

Endogenous Nitric Oxide Protects Bacteria Against a Wide Spectrum of Antibiotics

(2009) I. Gusarov et al.   SCIENCE

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Optical mapping and 454 sequencing of Escherichia coli O157 : H7 isolates linked to the US 2006 spinach-associated outbreak

(2008) M. L. Kotewicz et al.   MICROBIOLOGY-SGM

High-Precision, Whole-Genome Sequencing of Laboratory Strains Facilitates Genetic Studies

(2008) Anjana Srivatsan et al.   PLoS Genetics