Assembling a Protein-Protein Interaction Map of the SSU Processome from Existing Datasets

A manually curated network of the PML nuclear body interactome reveals an important role for PML-NBs in SUMOylation dynamics

(2012) Ellen Van Damme et al.   International Journal of Biological Sciences

Direct interaction between Utp8p and Utp9p contributes to rRNA processing in budding yeast

(2010) Yu-Ching Huang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Building and analyzing protein interactome networks by cross-species comparisons

(2010) Amy M Wiles et al.   BMC Systems Biology

Utp25p, a nucleolar Saccharomyces cerevisiae protein, interacts with U3 snoRNP subunits and affects processing of the 35S pre-rRNA

(2010) Mauricio B. Goldfeder et al.   FEBS Journal

Evolutionary analysis reveals low coverage as the major challenge for protein interaction network alignment

(2010) Waqar Ali et al.   Molecular BioSystems

Yeast protein–protein interaction binding sites: prediction from the motif–motif, motif–domain and domain–domain levels

(2010) Erli Pang et al.   Molecular BioSystems

Functional Modules in theArabidopsisCore Cell Cycle Binary Protein–Protein Interaction Network

(2010) Joanna Boruc et al.   PLANT CELL

Improving the yeast two-hybrid system with permutated fusions proteins: the Varicella Zoster Virus interactome

(2010) Thorsten Stellberger et al.   Proteome Science

The DEAD-box RNA helicase-like Utp25 is an SSU processome component

(2010) J. M. Charette et al.   RNA

The small subunit processome in ribosome biogenesis-progress and prospects

(2010) Kathleen R. Phipps et al.   Wiley Interdisciplinary Reviews-RNA

The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis

(2009) Simon Lebaron et al.   EMBO JOURNAL

Spp382p Interacts with Multiple Yeast Splicing Factors, Including Possible Regulators of Prp43 DExD/H-Box Protein Function

(2009) S. Pandit et al.   GENETICS

Shifted Transversal Design smart-pooling for high coverage interactome mapping

(2009) X. Xin et al.   GENOME RESEARCH

A Protein-Protein Interaction Map of Trypanosome ∼20S Editosomes

(2009) Achim Schnaufer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Untangling the protein web

(2009) Nathan Blow   NATURE

Recurated protein interaction datasets

(2009) Lukasz Salwinski et al.   NATURE METHODS

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions

(2008) Seesandra V. Rajagopala et al.   BIOINFORMATICS

A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis

(2008) Mike Boxem et al.   CELL

The Hsp90 chaperone controls the biogenesis of L7Ae RNPs through conserved machinery

(2008) Séverine Boulon et al.   JOURNAL OF CELL BIOLOGY

A Direct Interaction between the Utp6 Half-a-Tetratricopeptide Repeat Domain and a Specific Peptide in Utp21 Is Essential for Efficient Pre-rRNA Processing

(2008) E. A. Champion et al.   MOLECULAR AND CELLULAR BIOLOGY

Cost-effective strategies for completing the interactome

(2008) Ariel S Schwartz et al.   NATURE METHODS

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

(2008) Nicolas Simonis et al.   NATURE METHODS

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

Literature-curated protein interaction datasets

(2008) Michael E Cusick et al.   NATURE METHODS

SMART 6: recent updates and new developments

(2008) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

BIOCHEMISTRY: Not Comparable, But Complementary

(2008) L. J. Jensen et al.   SCIENCE

An in Vivo Map of the Yeast Protein Interactome

(2008) K. Tarassov et al.   SCIENCE