Computing the Partition Function for Kinetically Trapped RNA Secondary Structures

Computing folding pathways between RNA secondary structures

(2010) Ivan Dotu et al.   NUCLEIC ACIDS RESEARCH

BarMap: RNA folding on dynamic energy landscapes

(2010) I. L. Hofacker et al.   RNA

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

The jerky and knotty dynamics of RNA

(2009) Hervé Isambert   METHODS

Improved RNA secondary structure prediction by maximizing expected pair accuracy

(2009) Z. J. Lu et al.   RNA

ASYMPTOTICS OF CANONICAL AND SATURATED RNA SECONDARY STRUCTURES

(2009) PETER CLOTE et al.   Journal of Bioinformatics and Computational Biology

RNA Folding: Conformational Statistics, Folding Kinetics, and Ion Electrostatics

(2008) Shi-Jie Chen   Annual Review of Biophysics

RNA dynamics: it is about time

(2008) Hashim M Al-Hashimi et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Simulating RNA Folding Kinetics on Approximated Energy Landscapes

(2008) Xinyu Tang et al.   JOURNAL OF MOLECULAR BIOLOGY

PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots

(2008) M. Taufer et al.   NUCLEIC ACIDS RESEARCH

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH