Assignment of PolyProline II Conformation and Analysis of Sequence – Structure Relationship

A structural-alphabet-based strategy for finding structural motifs across protein families

(2010) Chih Yuan Wu et al.   NUCLEIC ACIDS RESEARCH

Evaluating Molecular Mechanical Potentials for Helical Peptides and Proteins

(2010) Erik J. Thompson et al.   PLoS One

Ramachandran redux

(2010) Z. Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Redrawing the Ramachandran plot after inclusion of hydrogen-bonding constraints

(2010) L. L. Porter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A survey of left-handed polyproline II helices

(2010) Benjamin J. Stapley et al.   PROTEIN SCIENCE

Physical-chemical determinants of coil conformations in globular proteins

(2010) Lauren L. Perskie et al.   PROTEIN SCIENCE

The Polyproline Site in Hinge 2 Influences the Functional Capacity of Truncated Dystrophins

(2010) Glen B. Banks et al.   PLoS Genetics

Analysis of protein contacts into Protein Units

(2009) Guilhem Faure et al.   BIOCHIMIE

Protein short loop prediction in terms of a structural alphabet

(2009) Manoj Tyagi et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Diversity of polyproline recognition by EVH1 domains

(2009) Francis et al.   Frontiers in Bioscience-Landmark

Covalently Bound Substrate at the Regulatory Site of Yeast Pyruvate Decarboxylases Triggers Allosteric Enzyme Activation

(2009) Steffen Kutter et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Effects of Terminal Functional Groups on the Stability of the Polyproline II Structure: A Combined Experimental and Theoretical Study

(2009) Michael Kuemin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Origin of the change in solvation enthalpy of the peptide group when neighboring peptide groups are added

(2009) F. Avbelj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of loop boundaries using different local structure assignment methods

(2009) Manoj Tyagi et al.   PROTEIN SCIENCE

On the occurrence of linear groups in proteins

(2009) Scott A. Hollingsworth et al.   PROTEIN SCIENCE

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins

(2008) D. A. C. Beck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Binding of the Proline-Rich Segment of Myelin Basic Protein to SH3 Domains:  Spectroscopic, Microarray, and Modeling Studies of Ligand Conformation and Effects of Posttranslational Modifications†

(2007) Eugenia Polverini et al.   BIOCHEMISTRY

Protein contacts, inter-residue interactions and side-chain modelling

(2007) Guilhem Faure et al.   BIOCHIMIE

Protein structure mining using a structural alphabet

(2007) M. Tyagi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

In silicolocal structure approach: A case study on Outer Membrane Proteins

(2007) Juliette Martin et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A simple model for polyproline II structure in unfolded states of alanine-based peptides

(2002) Rohit V. Pappu et al.   PROTEIN SCIENCE

Extension of a local backbone description using a structural alphabet: A new approach to the sequence-structure relationship

(2002) Alexandre G. de Brevern et al.   PROTEIN SCIENCE