Construction of a high-density genetic map and its application for leaf shape QTL mapping in poplar

Construction of an ultrahigh-density genetic linkage map for Jatropha curcas L. and identification of QTL for fruit yield

(2018) Zhiqiang Xia et al.   Biotechnology for Biofuels

Prediction and association mapping of agronomic traits in maize using multiple omic data

(2017) Y Xu et al.   HEREDITY

Identification and characterization of long non-coding RNAs in response to early infection by Melampsora larici-populina using genome-wide high-throughput RNA sequencing

(2017) Nian Wang et al.   Tree Genetics & Genomes

NARROW AND ROLLED LEAF 2regulates leaf shape, male fertility, and seed size in rice

(2016) Shuangshuang Zhao et al.   Journal of Integrative Plant Biology

QTLs for Woolly Poplar Aphid (Phloeomyzus passerinii L.) Resistance Detected in an Inter-Specific Populus deltoides x P. nigra Mapping Population

(2016) Giorgia Carletti et al.   PLoS One

Mapping QTLs associated with fruit quality traits in peach [Prunus persica (L.) Batsch] using SNP maps

(2016) José Luis Zeballos et al.   Tree Genetics & Genomes

Association Mapping of Flowering Time QTLs and Insight into Their Contributions to Rapeseed Growth Habits

(2016) Nian Wang et al.   Frontiers in Plant Science

Genome-wide Identification of TCP Family Transcription Factors from Populus euphratica and Their Involvement in Leaf Shape Regulation

(2016) Xiaodong Ma et al.   Scientific Reports

A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

(2015) Rui Sun et al.   BMC GENOMICS

Scalable and cost-effective NGS genotyping in the cloud

(2015) Yassine Souilmi et al.   BMC Medical Genomics

Construction of a high-density genetic map and QTLs mapping for sugars and acids in grape berries

(2015) Jie Chen et al.   BMC PLANT BIOLOGY

Genetical genomics of Populus leaf shape variation

(2015) Derek R. Drost et al.   BMC PLANT BIOLOGY

Genetic architecture of growth traits inPopulusrevealed by integrated quantitative trait locus (QTL) analysis and association studies

(2015) Qingzhang Du et al.   NEW PHYTOLOGIST

RIG: Recalibration and Interrelation of Genomic Sequence Data with the GATK

(2015) Ryan F. McCormick et al.   G3-Genes Genomes Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Association mapping for morphological and physiological traits in Populus simonii

(2014) Zunzheng Wei et al.   BMC GENETICS

Critical review of NGS analyses for de novo genotyping multigene families

(2014) Jackie Lighten et al.   MOLECULAR ECOLOGY

Genetic Dissection of Leaf Development in Brassica rapa Using a Genetical Genomics Approach

(2014) D. Xiao et al.   PLANT PHYSIOLOGY

Genome Anchored QTLs for Biomass Productivity in Hybrid Populus Grown under Contrasting Environments

(2013) Wellington Muchero et al.   PLoS One

Genomic insights into salt adaptation in a desert poplar

(2013) Tao Ma et al.   Nature Communications

Analysis of the role of Arabidopsis class I TCP genes AtTCP7, AtTCP8, AtTCP22, and AtTCP23 in leaf development

(2013) José A. Aguilar-Martínez et al.   Frontiers in Plant Science

Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features

(2012) Joo-Hyun Seo et al.   BMC GENOMICS

Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing

(2012) Nian Wang et al.   BMC PLANT BIOLOGY

Integrating genome annotation and QTL position to identify candidate genes for productivity, architecture and water-use efficiency in Populus spp

(2012) Romain Monclus et al.   BMC PLANT BIOLOGY

Mutations in an AP2 Transcription Factor-Like Gene Affect Internode Length and Leaf Shape in Maize

(2012) Fukun Jiang et al.   PLoS One

Identification of quantitative trait loci and candidate genes for cadmium tolerance in Populus

(2012) B. R. Induri et al.   TREE PHYSIOLOGY

Flowering time variation in oilseed rape (Brassica napus L.) is associated with allelic variation in the FRIGIDA homologue BnaA.FRI.a

(2011) Nian Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis

(2011) Martin Kieffer et al.   PLANT JOURNAL

R/qtl: high-throughput multiple QTL mapping: Fig. 1.

(2010) Danny Arends et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci

(2009) Anne M Rae et al.   BMC PLANT BIOLOGY

Fine mapping and candidate gene analysis of a green-revertible albino gene gra(t) in rice

(2009) Tao Chen et al.   Journal of Genetics and Genomics

Genetic networks regulated byASYMMETRIC LEAVES1(AS1) andAS2in leaf development inArabidopsis thaliana:KNOXgenes control five morphological events

(2009) Masaya Ikezaki et al.   PLANT JOURNAL

NARROW LEAF 7 controls leaf shape mediated by auxin in rice

(2008) Kenji Fujino et al.   MOLECULAR GENETICS AND GENOMICS

A functional genomics resource forBrassica napus: development of an EMS mutagenized population and discovery ofFAE1point mutations by TILLING

(2008) Nian Wang et al.   NEW PHYTOLOGIST

QTL mapping of yield and fiber traits based on a four-way cross population in Gossypium hirsutum L.

(2008) Hongde Qin et al.   THEORETICAL AND APPLIED GENETICS