Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis

Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)

(2012) J Ferreira de Carvalho et al.   HEREDITY

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

A genome-wide BAC end-sequence survey of sugarcane elucidates genome composition, and identifies BACs covering much of the euchromatin

(2012) Changsoo Kim et al.   PLANT MOLECULAR BIOLOGY

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

(2011) Juan E. Zalapa et al.   AMERICAN JOURNAL OF BOTANY

Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome

(2011) Raja Ragupathy et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.)

(2011) Abhishek Bohra et al.   BMC PLANT BIOLOGY

An overview of the Phalaenopsis orchid genome through BAC end sequence analysis

(2011) Chia-Chi Hsu et al.   BMC PLANT BIOLOGY

Differential Expression of the Transcripts of Spartina alterniflora Loisel (Smooth Cordgrass) Induced in Response to Petroleum Hydrocarbon

(2011) Mangu Venkata RamanaRao et al.   MOLECULAR BIOTECHNOLOGY

New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins

(2011)   NEW PHYTOLOGIST

Characterizing the walnut genome through analyses of BAC end sequences

(2011) Jiajie Wu et al.   PLANT MOLECULAR BIOLOGY

Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae

(2011) V. Prasad et al.   Nature Communications

Flow cytometry and GISH reveal mixed ploidy populations and Spartina nonaploids with genomes of S. alterniflora and S. maritima origin

(2010) Simon Renny-Byfield et al.   ANNALS OF BOTANY

Long-term performance of a plant microbial fuel cell with Spartina anglica

(2010) Ruud A. Timmers et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The production of hybrids with high ecological amplitude between exotic Spartina densiflora and native S. maritima in the Iberian Peninsula

(2010) J. M. Castillo et al.   DIVERSITY AND DISTRIBUTIONS

A classification of the Chloridoideae (Poaceae) based on multi-gene phylogenetic trees

(2010) Paul M. Peterson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

A multiple species approach to biomass production from native herbaceous perennial feedstocks

(2009) J. L. Gonzalez-Hernandez et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina

(2009) Christian Parisod et al.   NEW PHYTOLOGIST

Duplication and Divergence of Grass Genomes: Integrating the Chloridoids

(2009) Changsoo Kim et al.   Tropical Plant Biology

Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae)

(2008) M. L. Ainouche et al.   BIOLOGICAL INVASIONS

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

Development of genomic resources for Citrus clementina: characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences

(2008) Javier Terol et al.   BMC GENOMICS

Primary responses to salt stress in a halophyte, smooth cordgrass (Spartina alterniflora Loisel.)

(2008) Niranjan Baisakh et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Transcriptome analysis of leaf tissue from Bermudagrass (Cynodon dactylon) using a normalised cDNA library

(2008) Changsoo Kim et al.   FUNCTIONAL PLANT BIOLOGY

Comparison of the role of two Spartina species in terms of phytostabilization and bioaccumulation of metals in the estuarine sediment

(2008) J. Cambrollé et al.   MARINE POLLUTION BULLETIN

Evolution of C4 Phosphoenolpyruvate Carboxykinase in Grasses, from Genotype to Phenotype

(2008) Pascal-Antoine Christin et al.   MOLECULAR BIOLOGY AND EVOLUTION

The enigmatic invasiveSpartina densiflora: A history of hybridizations in a polyploidy context

(2008) P. M. FORTUNE et al.   MOLECULAR ECOLOGY

Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences

(2008) Pablo F. Cavagnaro et al.   MOLECULAR GENETICS AND GENOMICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution

(2008) J. Salse et al.   PLANT CELL

An overview of the apple genome through BAC end sequence analysis

(2008) Yuepeng Han et al.   PLANT MOLECULAR BIOLOGY

Oligocene CO2 Decline Promoted C4 Photosynthesis in Grasses

(2007) Pascal-Antoine Christin et al.   CURRENT BIOLOGY

Evidence for preferential depths of metal retention in roots of salt marsh plants

(2007) Miguel Caetano et al.   SCIENCE OF THE TOTAL ENVIRONMENT