Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice

(2011) Yutaka Sato et al.   BMC PLANT BIOLOGY

A stele-enriched gene regulatory network in the Arabidopsis root

(2011) S. M. Brady et al.   Molecular Systems Biology

Auxin stimulates DWARF4 expression and brassinosteroid biosynthesis in Arabidopsis

(2011) Yuhee Chung et al.   PLANT JOURNAL

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.)

(2010) ChenJia Shen et al.   JOURNAL OF EXPERIMENTAL BOTANY

A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection

(2010) Hirokazu Takahashi et al.   JOURNAL OF PLANT RESEARCH

Food: An underground revolution

(2010) Virginia Gewin   NATURE

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions

(2010) Y. Sato et al.   NUCLEIC ACIDS RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Rice Expression Atlas In Reproductive Development

(2010) Masahiro Fujita et al.   PLANT AND CELL PHYSIOLOGY

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

VisuaLRTC: A New View on Lateral Root Initiation by Combining Specific Transcriptome Data Sets

(2010) B. Parizot et al.   PLANT PHYSIOLOGY

Dichotomy in the NRT Gene Families of Dicots and Grass Species

(2010) Darren Plett et al.   PLoS One

The roots of a new green revolution

(2010) Griet Den Herder et al.   TRENDS IN PLANT SCIENCE

A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies

(2009) Yuling Jiao et al.   NATURE GENETICS

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Shoot Na+ Exclusion and Increased Salinity Tolerance Engineered by Cell Type-Specific Alteration of Na+ Transport in Arabidopsis

(2009) I. S. Moller et al.   PLANT CELL

An Auxin Gradient and Maximum in the Arabidopsis Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis

(2009) S. V. Petersson et al.   PLANT CELL

Adaptation of plasma membrane H+-ATPase of rice roots to low pH as related to ammonium nutrition

(2009) YIYONG ZHU et al.   PLANT CELL AND ENVIRONMENT

A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K+/Na+ratio in leaves during salinity stress

(2009) FELIX HAUSER et al.   PLANT CELL AND ENVIRONMENT

A dynamic gene expression atlas covering the entire life cycle of rice

(2009) Lei Wang et al.   PLANT JOURNAL

Starch Synthesis in Arabidopsis Is Achieved by Spatial Cotranscription of Core Starch Metabolism Genes

(2009) H.-L. Tsai et al.   PLANT PHYSIOLOGY

LBD18/ASL20 Regulates Lateral Root Formation in Combination with LBD16/ASL18 Downstream of ARF7 and ARF19 in Arabidopsis

(2009) H. W. Lee et al.   PLANT PHYSIOLOGY

TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development

(2008) Anna N. Stepanova et al.   CELL

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Functional genomics of root growth and development in Arabidopsis

(2008) Anjali Iyer-Pascuzzi et al.   CURRENT OPINION IN PLANT BIOLOGY

Regulation of Root Elongation by Histone Acetylation in Arabidopsis

(2008) Alexander Krichevsky et al.   JOURNAL OF MOLECULAR BIOLOGY

Control of rice grain-filling and yield by a gene with a potential signature of domestication

(2008) Ertao Wang et al.   NATURE GENETICS

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

Various Spatiotemporal Expression Profiles of Anther-Expressed Genes in Rice

(2008) T. Hobo et al.   PLANT AND CELL PHYSIOLOGY

Domain II Mutations in CRANE/IAA18 Suppress Lateral Root Formation and Affect Shoot Development in Arabidopsis thaliana

(2008) Takeo Uehara et al.   PLANT AND CELL PHYSIOLOGY

Comprehensive Transcriptome Analysis of Phytohormone Biosynthesis and Signaling Genes in Microspore/Pollen and Tapetum of Rice

(2008) Ko Hirano et al.   PLANT AND CELL PHYSIOLOGY

Hormone interactions at the root apical meristem

(2008) Eva Benková et al.   PLANT MOLECULAR BIOLOGY

Hormone interactions during lateral root formation

(2008) Hidehiro Fukaki et al.   PLANT MOLECULAR BIOLOGY

Molecular Genetics of Rice Root Development

(2008) J. Rebouillat et al.   Rice

Emerging role of cytokinin as a regulator of cellular differentiation

(2007) Raffaele Dello Ioio et al.   CURRENT OPINION IN PLANT BIOLOGY

Tissue and Cell-Specific Localization of Rice Aquaporins and Their Water Transport Activities

(2007) J. Sakurai et al.   PLANT AND CELL PHYSIOLOGY