Targeting the endothelial progenitor cell surface proteome to identify novel mechanisms that mediate angiogenic efficacy in a rodent model of vascular disease

Single nucleotide polymorphisms ofCD244gene predispose to renal and neuropsychiatric manifestations with systemic lupus erythematosus

(2014) Yuko Ota et al.   Modern Rheumatology

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Bone marrow mononuclear cells induce beneficial remodeling and reduce diastolic dysfunction in the left ventricle of hypertensive SS/MCWi rats

(2012) Sarah J. Parker et al.   PHYSIOLOGICAL GENOMICS

CD48 on hematopoietic progenitors regulates stem cells and suppresses tumor formation

(2011) N. C. Boles et al.   BLOOD

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(2011) Stefanie Dimmeler et al.   CIRCULATION RESEARCH

Cutting Edge: An NK Cell-Independent Role for Slamf4 in Controlling Humoral Autoimmunity

(2011) D. R. Brown et al.   JOURNAL OF IMMUNOLOGY

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

Characterization of the genomic structure and function of regions influencing renin and angiogenesis in the SS rat

(2011) Timothy J. Stodola et al.   PHYSIOLOGICAL GENOMICS

Visualize: A free and open source multifunction tool for proteomics data analysis

(2011) Brian D. Halligan et al.   PROTEOMICS

Concise Review: Circulating Endothelial Progenitor Cells for Vascular Medicine

(2011) Takayuki Asahara et al.   STEM CELLS

Association of variation in Fc  receptor 3B gene copy number with rheumatoid arthritis in Caucasian samples

(2010) C. McKinney et al.   ANNALS OF THE RHEUMATIC DISEASES

The Promise of Cell-Based Therapies for Diabetic Complications

(2010) Yagna P.R. Jarajapu et al.   CIRCULATION RESEARCH

Evidence for both copy number and allelic (NA1/NA2) risk at the FCGR3B locus in systemic lupus erythematosus

(2010) David L Morris et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Copy number, linkage disequilibrium and disease association in the FCGR locus

(2010) H. A. Niederer et al.   HUMAN MOLECULAR GENETICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Role of the renin angiotensin system on bone marrow-derived stem cell function and its impact on skeletal muscle angiogenesis

(2010) Micheline M. de Resende et al.   PHYSIOLOGICAL GENOMICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Low Cost, Scalable Proteomics Data Analysis Using Amazon’s Cloud Computing Services and Open Source Search Algorithms

(2009) Brian D. Halligan et al.   JOURNAL OF PROTEOME RESEARCH

The Mouse C2C12 Myoblast Cell SurfaceN-Linked Glycoproteome

(2009) Rebekah L. Gundry et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

(2009) Bernd Wollscheid et al.   NATURE BIOTECHNOLOGY

Intramuscular Transplantation of G-CSF-Mobilized CD34+Cells in Patients With Critical Limb Ischemia: A Phase I/IIa, Multicenter, Single-Blinded, Dose-Escalation Clinical Trial

(2009) Atsuhiko Kawamoto et al.   STEM CELLS

Detection and characterization of circulating endothelial progenitor cells in normal rat blood

(2009) Roberta A. Thomas et al.   JOURNAL OF PHARMACOLOGICAL AND TOXICOLOGICAL METHODS

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Analysis of Cell Surface Proteome Changes via Label-free, Quantitative Mass Spectrometry

(2008) Ralph Schiess et al.   MOLECULAR & CELLULAR PROTEOMICS

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

(2008) Brian T. Wilhelm et al.   NATURE

Distribution and functional impact of DNA copy number variation in the rat

(2008) Victor Guryev et al.   NATURE GENETICS

Stem cell transcriptome profiling via massive-scale mRNA sequencing

(2008) Nicole Cloonan et al.   NATURE METHODS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

The Rat Genome Database 2009: variation, ontologies and pathways

(2008) M. R. Dwinell et al.   NUCLEIC ACIDS RESEARCH

Endothelial progenitor cells in vascular repair and remodeling

(2008) M HRISTOV et al.   PHARMACOLOGICAL RESEARCH

Congenic strains reveal the effect of the renin gene on skeletal muscle angiogenesis induced by electrical stimulation

(2008) Micheline M. de Resende et al.   PHYSIOLOGICAL GENOMICS

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE