Calculating diffusion and permeability coefficients with the oscillating forward-reverse method

Computer data analysis of the oscillating forward–reverse method

(2012) Bryan W. Holland et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Exploring the free-energy landscapes of biological systems with steered molecular dynamics

(2011) L. Y. Chen   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Drift-oscillatory steering with the forward-reverse method for calculating the potential of mean force

(2011) Mostafa NategholEslam et al.   PHYSICAL REVIEW E

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

CHARMM-GUI Membrane Builder for Mixed Bilayers and Its Application to Yeast Membranes

(2009) Sunhwan Jo et al.   BIOPHYSICAL JOURNAL

Absolute FKBP binding affinities obtained via nonequilibrium unbinding simulations

(2009) F. Marty Ytreberg   JOURNAL OF CHEMICAL PHYSICS

Nonequilibrium fluctuation-dissipation theorem of Brownian dynamics

(2008) L. Y. Chen   JOURNAL OF CHEMICAL PHYSICS

Prediction of binding free energy for adsorption of antimicrobial peptide lactoferricin B on a POPC membrane

(2008) Victor Vivcharuk et al.   PHYSICAL REVIEW E

Springs and Speeds in Free Energy Reconstruction from Irreversible Single-Molecule Pulling Experiments†

(2007) David D. L. Minh et al.   JOURNAL OF PHYSICAL CHEMISTRY B