Article
Physics, Fluids & Plasmas
Minsuk Kim, Soon-Hyung Yook
Summary: The study reveals that the phase transition characteristics of the DWMV model on ER networks and SF networks are associated with the degree of nodes, and belong to different universality classes under different conditions.
Article
Physics, Multidisciplinary
Xuan He, Luyang Wang, Hongbo Zhu, Zheng Liu
Summary: In this study, complex weighted networks for seismicity based on spacetime influence domain were constructed for three different regions. It was found that high-weight links constitute a certain proportion in the networks. The analysis revealed that degree distribution, weight distribution, and nodal strength distribution of the weighted networks follow a power-law distribution, and both unweighted and weighted networks exhibit assortative mixing and hierarchical structures.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS
(2021)
Article
Mathematics, Interdisciplinary Applications
Qi Zhang, Diego Garlaschelli
Summary: The asymptotic (non)equivalence of canonical and microcanonical ensembles, describing systems with soft and hard constraints respectively, is a central concept in statistical physics. Recently, it has been reformulated in terms of a nonvanishing relative entropy density between microcanonical and canonical probabilities. In presence of extensively many local constraints, vanishing relative fluctuations no longer guarantee ensemble equivalence.
CHAOS SOLITONS & FRACTALS
(2023)
Article
Engineering, Mechanical
Yuan Chen, Aijing Lin
Summary: Weighted link entropy(WLE) and multiscale weighted link entropy(MWLE) are proposed in this paper to quantify complexity of nonlinear time series. WLE shows reduced sensitivity to noise and reflects minute changes of complexity in complex systems, while MWLE can predict financial crisis and detect multiscale structure in financial time series.
NONLINEAR DYNAMICS
(2021)
Article
Computer Science, Artificial Intelligence
Oguz Findik, Emrah Ozkaynak
Summary: Link prediction is crucial for forecasting future links in complex networks, with traditional methods often falling short due to limited consideration of node weighting. This study proposes a novel model based on node weighting, showing superior success rates compared to current technology methods.
Article
Engineering, Biomedical
Ryosuke Matsuzawa, Akira Matsuo, Shuya Fukamachi, Sho Shimada, Midori Takeuchi, Takuya Nishina, Philip Kollmannsberger, Ryo Sudo, Satoru Okuda, Tadahiro Yamashita
Summary: Tissue engineers have used 3D scaffolds to control multicellular dynamics and tissue microstructures, but the detachment of cells from scaffolds has become a problem. By developing a new computational simulation method and a particle-based model, this study successfully reproduced the detachment processes observed in experiments and revealed the mechanism behind collective cellular detachment.
ACTA BIOMATERIALIA
(2023)
Article
Thermodynamics
Zhoutuo Tan, Zehan Cao, Wenxiao Chu, Qiuwang Wang
Summary: The Lee model is widely accepted for simulating mass transfer processes involving both evaporation and condensation. However, there is always a mismatch in condensation and evaporation coefficients, resulting in mass loss or excess. This study introduces a dynamic correction model called the mass-conservation model, which adjusts the condensation coefficient in each time step to ensure mass conservation. Validation of the model using three closed structures reveals significant mass loss and temperature prediction deviation in other models, while the present model shows improved accuracy and solves the issue of temperature prediction deviation caused by insufficient heat release and mass non-conservation through the correction of the condensation time relaxation coefficient.
INTERNATIONAL COMMUNICATIONS IN HEAT AND MASS TRANSFER
(2023)
Review
Green & Sustainable Science & Technology
Samuel Emebu, Jiri Pecha, Dagmar Janacova
Summary: This article reviews mathematical models of anaerobic digestion (AD) and classifies them. In addition, it discusses the biochemical stages and other processes essential to AD, and reviews the models on these processes. The comprehensive approach of this review aims to evaluate the interdependence and individual and interactive effects of all processes, process factors, and process estimations on AD.
RENEWABLE & SUSTAINABLE ENERGY REVIEWS
(2022)
Article
Computer Science, Artificial Intelligence
Longjie Li, Yanhong Wen, Shenshen Bai, Panfeng Liu
Summary: This paper proposes a new method for link prediction that adaptively assesses the connection likelihood of node pairs. Experimental results show that the proposed method outperforms other methods in terms of accuracy.
KNOWLEDGE-BASED SYSTEMS
(2022)
Article
Mathematics, Applied
Xiaoyan Wang, Junyuan Yang, Xiaofeng Luo
Summary: Genetic heterogeneity plays a crucial role in the interaction of microorganisms, and the competitive exclusion principle is the main governing principle for disease competition. This paper studies the dynamics of a two-strain SIS epidemic model on complex networks and derives the reproduction numbers associated with each strain. It is proven that the competitive exclusion principle holds globally and the endemic equilibrium uniquely and globally coexists.
JOURNAL OF APPLIED MATHEMATICS AND COMPUTING
(2022)
Article
Thermodynamics
Wandong Bai, Wei Chen, Mingfei Li, Mumin Rao, Minking K. Chyu
Summary: Numerical simulation for condensation applications is restricted by phase change modeling. An improved model with a controllable parameter of interfacial temperature difference is developed to overcome the inefficiency and difficulty in coefficient determination. The model is validated and shows good agreement with theoretical, empirical, and experimental results. It is capable of capturing heat transfer characteristics for various condensation applications and can support future research and application in multiphase flow in engineering.
INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER
(2023)
Article
Physics, Multidisciplinary
Wenjun Jing, Yi Li, Xiaoqin Zhang, Juping Zhang, Zhen Jin
Summary: This study examines the role of edge weights in the spread of rumors on networks, finding that weight heterogeneity has complex effects on the dynamics of rumor propagation. Increasing weight distribution heterogeneity slows down the growth rate of rumors, decreases the final size and maximum influence, while increasing the duration of spreading. However, changes in both the values and proportions of weights make it difficult to predict the dynamics of rumors based solely on the mean and variance of weight distribution.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS
(2022)
Article
Mathematics, Applied
Wenjie Li, Yanyi Nie, Wenyao Li, Xiaolong Chen, Sheng Su, Wei Wang
Summary: This paper proposes a competing spread model for two epidemics on higher-order networks and analyzesthe factors that affect the spread process. The experimental results show that the difference in 1-simplex infection rates between the two epidemics and the increase in 2-simplex infection rates have significant impacts on the spread process.
Article
Physics, Multidisciplinary
P. B. Divya, Divya Sindhu Lekha, T. P. Johnson, Kannan Balakrishnan
Summary: This study examines the vulnerability of link-weighted networks to different central-attack strategies. It finds that attacks based on both betweenness centrality and degree centrality are the most hazardous when considering the disintegration of giant components. However, when assessing attacks based on the average geodesic distance, attacks using closeness centrality are equally relevant.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS
(2022)
Article
Physics, Multidisciplinary
Yiqiao Li, Chao Niu, Shengqiang Shen, Xingsen Mu, Liuyang Zhang
Summary: In this study, a non-equilibrium condensation model considering real physical properties was coupled with seven turbulence models to investigate the complex flow phenomena and the impact on the performance of supersonic steam ejectors. The results showed differences in the predictions of shock waves, non-equilibrium condensation, and boundary layer separation by different models.
Article
Biochemical Research Methods
Joana Vieira Silva, Sooyeon Yoon, Sara Domingues, Sofia Guimaraes, Alexander V. Goltsev, Edgar Figueiredo da Cruz e Silva, Jose Fernando F. Mendes, Odete Abreu Beirao da Cruz e Silva, Margarida Fardilha
BMC BIOINFORMATICS
(2015)
Article
Physics, Fluids & Plasmas
S. Yoon, M. Sorbaro Sindaci, A. V. Goltsev, J. F. F. Mendes
Article
Physics, Fluids & Plasmas
S. Yoon, A. V. Goltsev, S. N. Dorogovtsev, J. F. F. Mendes
Article
Multidisciplinary Sciences
Edgar A. P. Wright, Sooyeon Yoon, Antonio L. Ferreira, Jose F. F. Mendes, Alexander V. Goltsev
SCIENTIFIC REPORTS
(2019)
Article
Mathematics, Interdisciplinary Applications
E. A. P. Wright, S. Yoon, J. F. F. Mendes, A. Goltsev
Summary: A complete bifurcation analysis of the periodically forced Kuramoto model identified all bifurcations within the model, but it was found that the predicted phase diagram was incomplete. Numerical analysis showed that the model can undergo a phase transition from oscillations to wobbly rotations, not revealed by bifurcation analysis, due to a singular point in the order-parameter space.
CHAOS SOLITONS & FRACTALS
(2021)
Article
Biology
Alexander V. Goltsev, Edgar A. P. Wright, Jose F. F. Mendes, Sooyeon Yoon
Summary: This study focuses on how the core-shell organization controls the behavior of the suprachiasmatic nucleus (SCN), synchronization of the core and shell with the environment, and the impact on SCN behavior under different lighting conditions. The reduced Kuramoto model is used to analyze free-running and entrained SCN activity, as well as the phenomena of anticipation and dissociation. The results show that the core-shell organization enables anticipation of future events and predicts the emergence of a second rhythm for large and small lighting periods.
JOURNAL OF BIOLOGICAL RHYTHMS
(2022)
Article
Physics, Multidisciplinary
S. Yoon, K. P. O'Keeffe, J. F. F. Mendes, A. Goltsev
Summary: This article studies a model of nonidentical swarmalators, which are generalizations of phase oscillators that sync in time and swarm in space. The article introduces four collective states produced by the model and their applications, and proposes a generalized hypothesis that provides the first analytic description and conditions for the existence of these states.
PHYSICAL REVIEW LETTERS
(2022)
Article
Physics, Fluids & Plasmas
S. Yoon, E. A. P. Wright, J. F. F. Mendes, A. V. Goltsev
Summary: The impact of field heterogeneity on entrainment was studied in a system of uniformly interacting phase oscillators. Field heterogeneity induces dynamical heterogeneity in the system, disrupting synchronization between groups of oscillators and causing them to enter a new disrupted state. It is found that disrupted dynamics can vary between different groups.
Article
Physics, Fluids & Plasmas
S. Yoon, A. V. Goltsev, J. F. F. Mendes
Article
Biochemistry & Molecular Biology
Joana Vieira Silva, Sooyeon Yoon, Pieter-Jan De Bock, Alexander V. Goltsev, Kris Gevaert, Jose Fernando F. Mendes, Margarida Fardilha
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
(2017)
Article
Physics, Fluids & Plasmas
M. A. Lopes, E. M. Lopes, S. Yoon, J. F. F. Mendes, A. V. Goltsev
Article
Physics, Fluids & Plasmas
Sooyeon Yoon, Soon-Hyung Yook, Yup Kim
Article
Physics, Fluids & Plasmas
Sooyeon Yoon, Sungmin Lee, Soon-Hyung Yook, Yup Kim
Article
Physics, Fluids & Plasmas
Filippo Radicchi, Daniele Vilone, Sooeyon Yoon, Hildegard Meyer-Ortmanns