Article
Chemistry, Inorganic & Nuclear
V. F. de Paula, M. I. F. Guedes, M. F. van Tilburg, I. G. P. Vieira, J. B. Silva, R. C. R. dos Santos, J. P. Echeverry, G. Costa, B. P. Silva, F. F. Maia, E. W. S. Caetano, V. N. Freire
Summary: UV-vis optical absorption measurements and Density Functional Theory (DFT) calculations were used to study the optical properties and electronic structure of ethanol solvated quercetin molecule and different hydrated forms of quercetin crystals. The results showed that anhydrous quercetin exhibited semiconductor behavior with a large direct bandgap, while hydrated forms had smaller indirect bandgaps and showed optical anisotropy.
JOURNAL OF SOLID STATE CHEMISTRY
(2022)
Article
Chemistry, Physical
Yuren Li, Lihe Yan, Jinhai Si, Zezhou Liang, Wenbo Huang, Heping Ma, Xun Hou
Summary: This study investigates the nonlinear optical limiting (OL) property of tin phthalocyanine porous organic frameworks (Sn-Pc-POFs) dispersion in the nanosecond regime. The results show that the material has excellent dispersibility, stability, and a low OL threshold. To explain the nonlinear optical response mechanism, the energy level structure of Sn-Pc-POFs was simulated and the photoinduced carrier dynamics were studied. The study reveals that the material's excellent OL property is attributed to its large absorption cross section and long excited state lifetime.
JOURNAL OF CHEMICAL PHYSICS
(2022)
Article
Nanoscience & Nanotechnology
Mikhail V. Vener, Olga D. Parashchuk, Oleg G. Kharlanov, Dmitry R. Maslennikov, Dmitry I. Dominskiy, Ivan Yu. Chernyshov, Dmitry Yu. Paraschuk, Andrey Yu. Sosorev
Summary: This study focuses on the role of low-frequency (LF) vibrational modes in modulating charge transfer integrals in high-mobility organic semiconductor crystals. By analyzing the effect of dynamic disorder on charge carrier dynamics, the importance of LF modes in limiting charge carrier mobility is justified. LF Raman spectroscopy is proposed as a useful tool for experimental study of non-local electron-phonon interaction (NLEPI), which can aid in the screening and rational design of organic semiconductors with high charge-carrier mobility.
ADVANCED ELECTRONIC MATERIALS
(2021)
Article
Biochemistry & Molecular Biology
J. G. S. Santos, A. Macedo-Filho, A. M. Silva, F. F. de Sousa, E. W. S. Caetano, M. B. da Silva, V. N. Freire
Summary: This study investigates the theoretical properties of palmitic acid crystal in its C form using DFT calculations, revealing potential applications in optoelectronic devices. The electronic bandstructure shows an indirect bandgap of 3.713 eV, suggesting characteristics of a wide bandgap semiconductor.
JOURNAL OF MOLECULAR MODELING
(2021)
Article
Nanoscience & Nanotechnology
M. Farkous, M. El-Yadri, H. Erguig, L. M. Perez, D. Laroze, Chuong Nguyen, Nguyen T. T. Binh, Nguyen N. Hieu, Huynh V. Phuc, M. Sadoqi, G. Long, E. Feddi
Summary: This study investigates the influence of biaxial strain on Janus MSSe monolayers, revealing that it fundamentally changes their electronic states and leads to a semiconductor-metal transition phase. The effective masses of electrons and holes in MSSe monolayers can be tuned by biaxial strain, and the optical properties are affected by the polarization direction of incident light, with a wide absorption spectrum in the visible light domain for Janus monolayers. The dielectric function computations indicate that the optical responses of Janus monolayers MoSSe and WSSe strongly depend on the applied strain ratio, making them potential materials for optoelectronics applications.
PHYSICA E-LOW-DIMENSIONAL SYSTEMS & NANOSTRUCTURES
(2021)
Article
Chemistry, Physical
Huipeng Ma, Feng Lin, Shibo Cheng, Jin-Dou Huang
Summary: In this study, the electronic structures and conducting properties of BN-embedded perylene diimides (B2N2-PDIs) were systematically investigated. The substitution of C-C units with B-N units in the pi-electron core was found to significantly affect the reorganization energies, ionization potential, and electron affinity of the PDIs. It was also revealed that B2N2-PDIs have the potential to be developed as high-efficiency n-type organic semiconductor materials. Additionally, the three-dimensional angular resolution anisotropic mobility of 6-CH, 6-EH, and 6-DIPP was simulated for the first time, and their charge carrier-transport properties were characterized.
JOURNAL OF PHYSICAL CHEMISTRY C
(2023)
Article
Materials Science, Multidisciplinary
Jongho Kim, Jing Guo, Gjergji Sini, Michael Korning Sorensen, Jens Wenzel Andreasen, Kai Lin Woon, Veaceslav Coropceanu, Sri Harish Kumar Paleti, Huan Wei, Sebastien Peralta, Mohamed Mallouki, Christian Muller, Yuanyuan Hu, Thanh-Tuan Bui, Suhao Wang
Summary: Molecular doping is an effective method to optimize the electrical performance of conjugated polymers, but it may lead to disorder and decrease in electrical conductivity. This study demonstrates that rational engineering of polymer-dopant interactions can overcome dopant-induced disorder and enhance electrical conductivity. By designing polymer-dopant co-crystals with short packing distances, the doped polymer shows significantly improved conductivity.
MATERIALS TODAY ADVANCES
(2023)
Article
Chemistry, Physical
Tao Huang, Zhicheng Zhu, Chen Zhao, Wenchi Kong, Xuhang Chen, Ruiyan Li, Zhi Yu, Zhiming Shi, Dabing Li, Bai Yang, Weili Yu
Summary: By adjusting the carrier density and lateral transport of 2D Ruddlesden-Popper perovskites through a layer optimization strategy, ultra-high efficiency lateral structured photodetectors have been achieved.
JOURNAL OF MATERIALS CHEMISTRY A
(2022)
Article
Chemistry, Applied
Ran Chen, Lu Wang, Zhongwei An, Xinbing Chen, Pei Chen
Summary: In this study, several compounds were designed and synthesized to investigate the fluorination effect on the mesomorphic and photovoltaic performance of rod-like liquid crystal (LC) molecules. Experimental results and calculations revealed that fluorination not only decreased the melting points and increased the nematic phase temperature ranges, but also effectively improved the molar extinction coefficients, resulting in higher photocurrent density and efficiency. This study provides a scientific basis and experimental data for molecular engineering strategies to develop bifunctional materials combining the excellent properties of LCs and dye sensitizers.
Article
Chemistry, Multidisciplinary
Byeongsun Jun, Chi Ho Lee, Sang Uck Lee
Summary: In this study, we systematically investigated the strain-induced carrier mobility of two organic semiconductors and revealed their relationship with intermolecular packing configurations. The results showed periodic changes of the strain-induced carrier mobility, which can be attributed to the alternating phase changes of molecular orbital interactions. These findings are of significance for optimizing carrier mobility modulation and the development of organic electronic devices.
JOURNAL OF INDUSTRIAL AND ENGINEERING CHEMISTRY
(2022)
Article
Engineering, Environmental
Frank Leresche, Elena A. Vialykh, Fernando L. Rosario-Ortiz
Summary: This study calculated the UV-vis spectra of DOM model compounds using time-dependent density functional theory and successfully re-created the exponential shape of DOM absorption spectra by summing individual spectra. The effects of borohydride reduction on DOM absorbance spectra were accurately predicted, with a larger decrease in absorbance at longer wavelengths. Additionally, intra-molecular charge-transfer interactions were found to contribute to DOM absorption, while inter-molecular interactions were deemed less likely to play a role.
ENVIRONMENTAL SCIENCE & TECHNOLOGY
(2022)
Article
Physics, Multidisciplinary
Kaynat Alvi, S. Nazir
Summary: In this study, we investigated the combined effects of Co-doping and strain on the thermodynamics and electronic structure of FeTe2 using ab-initio calculations. Co-doping induced n-type conductivity in the system, with a substantial charge carrier density. The metallicity mainly came from Co-3d and Fe-3d orbitals. The Co-doped FeTe2 structure showed stability and n-type conduction under both compressive and tensile strains.
Article
Polymer Science
Faten Abbassi, Mohamed Mbarek, Maha Almoneef, Kamel Alimi
Summary: The physical and chemical properties of a new organic composite containing PVK-MEH-PPV bi-block copolymer and [6,6]-phenyl-C61-butyric acid methyl ester (PCBM) were examined through functionalization and charge transfer analysis. The interaction between donor and acceptor, as well as the effect of PCBM on the optical properties of the PVK-MEH-PPV matrix, were studied. Experimental and theoretical results suggested that the composite could be used as an active layer for organic solar cells.
Article
Chemistry, Applied
Denis A. Gazizov, Alexander S. Steparuk, Nadezhda S. Demina, Ekaterina F. Zhilina, Oleg S. Eltsov, German S. Lebedkin, Gennady L. Rusinov, Alexey E. Alexandrov, Alexey R. Tameev
Summary: Novel [1,2,4]triazolo[1,5-a]pteridine derivatives were synthesized for the creation of test systems based on them. It was found that the substituent in the pyrazine ring of the TPt framework had a stronger influence on photophysical properties than that in the triazole ring. Although the fluorescence quantum yields of the compounds were generally low (3-23%), some of the TPt derivatives showed sensitivity to trace amounts of organic peroxides, making them promising for test systems. Additionally, the low-lying HOMO energy levels, energy gap values, and electron mobility of TPt materials suggest their potential use in organic electronic devices.
Article
Nanoscience & Nanotechnology
Kerong Yang, Weijiang Chen, Yushun Zhao, Yu He, Xin Chen, Bin Du, Wei Yang, Song Zhang, Yufei Fu
Summary: This study develops a general strategy to improve the dielectric strength of epoxy polymer matrix by constructing interface charge traps, using the -CF3 group in partial replacement of the -CH3 group. This strategy increases the dielectric strength and surface breakdown voltage while maintaining mechanical and thermal properties, holding potential for wide application in future electrical and electronic equipment requiring resilience to high-voltage stress.
ACS APPLIED MATERIALS & INTERFACES
(2021)
Article
Biochemistry & Molecular Biology
Pedro F. N. Souza, Jackson L. Amaral, Leandro P. Bezerra, Francisco E. S. Lopes, Valder N. Freire, Jose T. A. Oliveira, Cleverson D. T. Freitas
Summary: Through in silico methods, it was found that ACE2-derived peptides could potentially interfere with the interaction between SARS-CoV-2 and the ACE2 receptor, inhibiting virus entry into human cells and providing new directions for treating COVID-19.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2022)
Article
Biochemistry & Molecular Biology
Jackson L. Amaral, Jose T. A. Oliveira, Francisco E. S. Lopes, Cleverson D. T. Freitas, Valder N. Freire, Leonardo V. Abreu, Pedro F. N. Souza
Summary: This study identified three synthetic peptides that strongly interact with the main protease of SARS-CoV-2, potentially affecting its activity and virus replication. These peptides have no toxicity to human cells and could offer new perspectives in the treatment of COVID-19.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2022)
Article
Microbiology
Ito Liberato, Leticia A. Lino, Juan K. D. Souza, Joao B. A. Neto, Livia G. A. Sa, Vitoria P. F. Cabral, Cecilia R. Silva, Bruno C. Cavalcanti, Manoel O. Moraes, Valder N. Freire, Hello V. N. Junior, Claudia R. Andrade
Summary: The antifungal activity of gallic acid against fluconazole-resistant Candida strains was evaluated, and its potential mechanism of action was determined.
FUTURE MICROBIOLOGY
(2022)
Article
Chemistry, Inorganic & Nuclear
Leonardo S. Barbosa, Edvan Moreira, Leonardo Villegas-Lelovsky, Ricardo Paupitz, David L. Azevedo
Summary: Motivated by recent experimental and theoretical results, this study investigates the structural and thermal stability, electronic properties, vibrational spectra, and optical absorptions of two new inorganic nanorings (cyclo[18]boron nitride and cyclo[18]boron carbon nitride), as analogues of cyclo[18]carbon. The research shows that the nanorings are stable, insulators, and apolar, with alternating triple or double, and single bonds. Moreover, the study suggests that BN-18 nanoring exhibits the highest thermal stability and that all nanorings can absorb in different regions of the UV spectra, making them potentially valuable for optoelectronic molecular devices.
JOURNAL OF CLUSTER SCIENCE
(2023)
Article
Chemistry, Inorganic & Nuclear
V. F. de Paula, M. I. F. Guedes, M. F. van Tilburg, I. G. P. Vieira, J. B. Silva, R. C. R. dos Santos, J. P. Echeverry, G. Costa, B. P. Silva, F. F. Maia, E. W. S. Caetano, V. N. Freire
Summary: UV-vis optical absorption measurements and Density Functional Theory (DFT) calculations were used to study the optical properties and electronic structure of ethanol solvated quercetin molecule and different hydrated forms of quercetin crystals. The results showed that anhydrous quercetin exhibited semiconductor behavior with a large direct bandgap, while hydrated forms had smaller indirect bandgaps and showed optical anisotropy.
JOURNAL OF SOLID STATE CHEMISTRY
(2022)
Article
Biochemistry & Molecular Biology
Victor L. B. Franca, Jackson L. Amaral, Yandara A. Martins, Ewerton W. S. Caetano, Kellen Brunaldi, Valder N. Freire
Summary: Atrazine, a widely used herbicide, has been found to cause persistent contamination of water and soil due to its high resistance to degradation. It is associated with fertility issues, increased risk of prostate cancer, and birth defects. This study characterizes the binding of atrazine to human serum albumin (HSA) and identifies the most likely binding sites and the amino acid residues involved in the binding interactions.
CHEMICO-BIOLOGICAL INTERACTIONS
(2022)
Article
Biochemistry & Molecular Biology
Valdir Ferreira de Paula Junior, Mauricio Fraga van Tilburg, Pablo Abreu Morais, Francisco Francine Maia Junior, Elza Gadelha Lima, Victor Tabosa dos Santos Oliveira, Maria Izabel Florindo Guedes, Ewerton Wagner Santos Caetano, Valder Nogueira Freire
Summary: In this study, the co-crystallized structures of the Zika virus protease NS2B-NS3 with two inhibitors were evaluated. The results suggest that quantum biochemistry methods hold promise for the design of novel inhibitors targeting NS2B-NS3.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Chemistry, Multidisciplinary
Bruno P. Silva, Antonio G. L. Costa, Mauricelio B. da Silva, Ambrosio M. Cunha, Regina C. R. Santos, Antoninho Valentini, Geancarlo Zanatta, Pedro de Lima-Neto, Ewerton W. S. Caetano, V. N. Freire
Summary: This study investigates the structural, electronic, and optical properties of DMF using density functional theory (DFT). The results show that the delta-sol correction method improves the estimation of the band-gap energy from DFT calculations. Additionally, simulations of a monolayer and crystal form of DMF demonstrate that intermolecular interactions decrease the electronic energy gap.
JOURNAL OF PHYSICS AND CHEMISTRY OF SOLIDS
(2022)
Article
Materials Science, Multidisciplinary
A. L. R. Mathias, F. M. O. Moucherek, W. O. Santos, F. S. Costa, M. S. Tavares, E. Moreira, D. L. Azevedo
Summary: This study investigates the properties of two-dimensional dichalcogenides MoS2, WS2, MoSe2, and WSe2 using density functional theory and density functional perturbation theory. The calculated structural parameters match well with experimental and theoretical data, and the energy bandgaps indicate that they are semiconductors. The complex dielectric function and optical absorption depend on the polarization of the incident light. Thermodynamic properties are also calculated. The theoretical peaks of the infrared and Raman spectra are analyzed in the frequency range of 200-480 cm(-1).
JOURNAL OF MATERIALS RESEARCH
(2023)
Article
Chemistry, Inorganic & Nuclear
Jose Barbosa Silva, Juan Pablo Echeverry, Regina Claudia Rodrigues dos Santos, Valdir Ferreira de Paula Jr, Maria Izabel Florindo Guedes, Bruno Poti e Silva, Antoninho Valentini, Ewerton Wagner Santos Caetano, Valder Nogueira Freire
Summary: This study presents the growth of monoclinic gamma-aminobutyric acid (GABA) crystals from an aqueous ethanol solution. The crystal structure was confirmed to be monoclinic with space group P21/c using X-ray diffraction analysis. Thermal stability and melting point of the GABA crystal were investigated. Experimental characterization and DFT calculations were performed to understand the optical properties of GABA crystals. The monoclinic GABA crystal was found to have an indirect band gap semiconductor behavior with a gap value of 5.02 eV and the highest optical absorption in the 5-6 eV energy range.
JOURNAL OF SOLID STATE CHEMISTRY
(2023)
Article
Materials Science, Multidisciplinary
W. O. Santos, F. M. O. Moucherek, A. C. Dias, E. Moreira, D. L. Azevedo
Summary: The monoclinic 1T'-RuO2 monolayer was investigated using density functional theory. The calculations considered norm-conserved pseudopotentials within the generalized gradient approximation and the hybrid functional HSE06. The study revealed significant absorption in the ultraviolet and visible regions, strong optical linear dichroism, and relevant excitonic effects with an exciton binding energy of 0.69 eV.
JOURNAL OF MATERIALS RESEARCH
(2023)
Article
Chemistry, Physical
B. C. C. Carneiro, L. S. Barbosa, E. Moreira, D. L. Azevedo
Summary: In this article, the structural and electronic properties of double nanorings were investigated using Density Functional Theory (DFT). 19 new structures were calculated and found to be stable. All the molecules studied exhibited positive vibrational frequencies, indicating stability. The calculated HOMO-LUMO gaps ranged from 0.244 eV to 2.064 eV, suggesting promising electronic properties. Optical absorptions were also analyzed using Time-Dependent Density Functional Theory (TD-DFT), with four molecules showing absorption in the visible region.
JOURNAL OF MOLECULAR STRUCTURE
(2023)
Review
Virology
Maria Karolaynne da Silva, Daniel Melo de Oliveira Campos, Shopnil Akash, Shahina Akter, Leow Chiuan Yee, Umberto Laino Fulco, Jonas Ivan Nobre Oliveira
Summary: This article reviews the advances of reverse vaccinology in designing mRNA vaccines against SARS-CoV-2, discussing the steps, in silico tools, challenges, and future directions for improvement.
Article
Chemistry, Multidisciplinary
Eveline M. Bezerra, Erika C. de Alvarenga, Ricardo P. dos Santos, Jeanlex S. de Sousa, Umberto L. Fulco, Valder N. Freire, Eudenilson L. Albuquerque, Roner F. da Costa
Summary: Losartan, a widely used hypertension medication, acts as a selective antagonist of angiotensin II receptor to reduce blood pressure. In this study, we investigated the interaction between losartan and sACE enzyme using molecular docking assays and quantum biochemistry calculations. Our findings reveal a new mechanism of action that has important implications for understanding the effects of losartan on hypertension.