A new insight into the 5-carboxycytosine and 5-formylcytosine under typical bisulfite conditions: a deamination mechanism study

Deamination, Oxidation, and C–C Bond Cleavage Reactivity of 5-Hydroxymethylcytosine, 5-Formylcytosine, and 5-Carboxycytosine

(2013) Stefan Schiesser et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The conversion of protonated cytosine-SO3− to uracil-SO3−: Insights into the novel induced hydrolytic deamination through bisulfite catalysis

(2013) Lingxia Jin et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Mechanism and Stem-Cell Activity of 5-Carboxycytosine Decarboxylation Determined by Isotope Tracing

(2012) Stefan Schiesser et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Effects of Protonation and C5 Methylation on the Electrophilic Addition Reaction of Cytosine: A Computational Study

(2012) Lingxia Jin et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Fundamental Reaction Pathway and Free Energy Profile for Inhibition of Proteasome by Epoxomicin

(2012) Donghui Wei et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution

(2012) M. J. Booth et al.   SCIENCE

The Discovery of 5-Formylcytosine in Embryonic Stem Cell DNA

(2011) Toni Pfaffeneder et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

CpG islands and the regulation of transcription

(2011) A. M. Deaton et al.   GENES & DEVELOPMENT

Mechanistic Study of the Deamination Reaction of Guanine: A Computational Study

(2011) Kabir M. Uddin et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Computational Study of the Deamination of 8-Oxoguanine

(2011) Kabir M. Uddin et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Quantum mechanics study and Monte Carlo simulation on the hydrolytic deamination of 5-methylcytosine glycol

(2011) Ze Qin Chen et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Water-catalyzed gas-phase hydrogen abstraction reactions of CH3O2 and HO2 with HO2: a computational investigation

(2011) Tianlei Zhang et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA

(2011) Y.-F. He et al.   SCIENCE

Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine

(2011) S. Ito et al.   SCIENCE

Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA

(2010) Colm Nestor et al.   BIOTECHNIQUES

Hydrolytic Deamination of 5,6-Dihydrocytosine in a Protic Medium: A Theoretical Study

(2010) Vanessa Labet et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Mechanism of Acid-Catalyzed Hydrolysis of Formamide from Cluster-Continuum Model Calculations: Concerted versus Stepwise Pathway

(2010) Binju Wang et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Theoretical Investigations on the Thermal Decomposition Mechanism of 5-Hydroxy-6-hydroperoxy-5,6-dihydrothymidine in Water

(2010) Ze-qin Chen et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

(2010) Shinsuke Ito et al.   NATURE

The Behaviour of 5-Hydroxymethylcytosine in Bisulfite Sequencing

(2010) Yun Huang et al.   PLoS One

Theoretical study of proton-catalyzed hydrolytic deamination mechanism of adenine

(2010) Huanjie Wang et al.   THEORETICAL CHEMISTRY ACCOUNTS

Hydrolytic Deamination of 5-Methylcytosine in Protic MediumA Theoretical Study

(2009) Vanessa Labet et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Designing an Appropriate Computational Model for DNA Nucleoside Hydrolysis: A Case Study of 2′-Deoxyuridine

(2009) Jennifer L. Przybylski et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1

(2009) M. Tahiliani et al.   SCIENCE

Mechanisms for the Deamination Reaction of Cytosine with H2O/OH−and 2H2O/OH−: A Computational Study

(2008) Mansour H. Almatarneh et al.   Journal of Chemical Information and Modeling

Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies

(2008) D. P. Genereux et al.   NUCLEIC ACIDS RESEARCH

Discovery of bisulfite-mediated cytosine conversion to uracil, the key reaction for DNA methylation analysis — A personal account

(2008) Hikoya HAYATSU   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

Proton catalyzed hydrolytic deamination of cytosine: a computational study

(2008) V. Labet et al.   THEORETICAL CHEMISTRY ACCOUNTS