- Home
- Publications
- Publication Search
- Publication Details
Title
Microsecond folding experiments and simulations: a match is made
Authors
Keywords
-
Journal
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
Volume 15, Issue 10, Pages 3372
Publisher
Royal Society of Chemistry (RSC)
Online
2013-01-30
DOI
10.1039/c3cp43992e
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Biomolecular Simulation: A Computational Microscope for Molecular Biology
- (2012) Ron O. Dror et al. Annual Review of Biophysics
- An α Helix to β Barrel Domain Switch Transforms the Transcription Factor RfaH into a Translation Factor
- (2012) Björn M. Burmann et al. CELL
- UV Resonance Raman Investigations of Peptide and Protein Structure and Dynamics
- (2012) Sulayman A. Oladepo et al. CHEMICAL REVIEWS
- Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations
- (2012) Yanxin Liu et al. Journal of Physical Chemistry Letters
- Slow Unfolded-State Structuring in Acyl-CoA Binding Protein Folding Revealed by Simulation and Experiment
- (2012) Vincent A. Voelz et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Peptide Chain Dynamics in Light and Heavy Water: Zooming in on Internal Friction
- (2012) Julius C. F. Schulz et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Raising the Speed Limit for β-Hairpin Formation
- (2012) Caitlin M. Davis et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Transition Path Times for Nucleic Acid Folding Determined from Energy-Landscape Analysis of Single-Molecule Trajectories
- (2012) Krishna Neupane et al. PHYSICAL REVIEW LETTERS
- Systematic Validation of Protein Force Fields against Experimental Data
- (2012) Kresten Lindorff-Larsen et al. PLoS One
- Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy
- (2012) A. Soranno et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-Molecule Fluorescence Experiments Determine Protein Folding Transition Path Times
- (2012) H. S. Chung et al. SCIENCE
- Resolution of localized small molecule–Aβ interactions by deep-ultraviolet resonance Raman spectroscopy
- (2011) Mingjuan Wang et al. BIOPHYSICAL CHEMISTRY
- Correction
- (2011) Stefano Piana et al. BIOPHYSICAL JOURNAL
- Simultaneous Observation of Peptide Backbone Lipid Solvation and α-Helical Structure by Deep-UV Resonance Raman Spectroscopy
- (2011) Christopher M. Halsey et al. CHEMBIOCHEM
- Markov models and dynamical fingerprints: Unraveling the complexity of molecular kinetics
- (2011) Bettina G. Keller et al. CHEMICAL PHYSICS
- Optimal use of data in parallel tempering simulations for the construction of discrete-state Markov models of biomolecular dynamics
- (2011) Jan-Hendrik Prinz et al. JOURNAL OF CHEMICAL PHYSICS
- Time scale separation leads to position-dependent diffusion along a slow coordinate
- (2011) Alexander Berezhkovskii et al. JOURNAL OF CHEMICAL PHYSICS
- Computational Design of High-Affinity Epitope Scaffolds by Backbone Grafting of a Linear Epitope
- (2011) Mihai L. Azoitei et al. JOURNAL OF MOLECULAR BIOLOGY
- Reducing Lambda Repressor to the Core
- (2011) Maxim B. Prigozhin et al. JOURNAL OF PHYSICAL CHEMISTRY B
- The Fast and the Slow: Folding and Trapping of λ6–85
- (2011) Maxim B. Prigozhin et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- What Is the Time Scale for α-Helix Nucleation?
- (2011) David De Sancho et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- α-Synuclein occurs physiologically as a helically folded tetramer that resists aggregation
- (2011) Tim Bartels et al. NATURE
- Probing molecular kinetics with Markov models: metastable states, transition pathways and spectroscopic observables
- (2011) Jan-Hendrik Prinz et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Rationally Designed Turn Promoting Mutation in the Amyloid-β Peptide Sequence Stabilizes Oligomers in Solution
- (2011) Jayakumar Rajadas et al. PLoS One
- Quantitative comparison of villin headpiece subdomain simulations and triplet-triplet energy transfer experiments
- (2011) K. A. Beauchamp et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- How Fast-Folding Proteins Fold
- (2011) K. Lindorff-Larsen et al. SCIENCE
- Tackling Force-Field Bias in Protein Folding Simulations: Folding of Villin HP35 and Pin WW Domains in Explicit Water
- (2010) Jeetain Mittal et al. BIOPHYSICAL JOURNAL
- Protein β-Sheet Nucleation Is Driven by Local Modular Formation
- (2010) Brent Wathen et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Enhanced Modeling via Network Theory: Adaptive Sampling of Markov State Models
- (2010) Gregory R. Bowman et al. Journal of Chemical Theory and Computation
- Computational Design and Experimental Testing of the Fastest-Folding β-Sheet Protein
- (2010) Stefano Piana et al. JOURNAL OF MOLECULAR BIOLOGY
- Unfolded-State Dynamics and Structure of Protein L Characterized by Simulation and Experiment
- (2010) Vincent A. Voelz et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Atomistic Folding Simulations of the Five-Helix Bundle Protein λ6−85
- (2010) Gregory R. Bowman et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Extremely slow intramolecular diffusion in unfolded protein L
- (2010) S. A. Waldauer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Atomic-Level Characterization of the Structural Dynamics of Proteins
- (2010) D. E. Shaw et al. SCIENCE
- Primary Peptide Folding Dynamics Observed with Ultrafast Temperature Jump
- (2009) Omar F. Mohammed et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Direct Observation of Downhill Folding of λ -Repressor in a Microfluidic Mixer
- (2009) Stephen J. DeCamp et al. BIOPHYSICAL JOURNAL
- The Fip35 WW Domain Folds with Structural and Mechanistic Heterogeneity in Molecular Dynamics Simulations
- (2009) Daniel L. Ensign et al. BIOPHYSICAL JOURNAL
- Slowing Down Downhill Folding: A Three-Probe Study
- (2009) Seung Joong Kim et al. BIOPHYSICAL JOURNAL
- Force Field Bias in Protein Folding Simulations
- (2009) Peter L. Freddolino et al. BIOPHYSICAL JOURNAL
- Common Structural Transitions in Explicit-Solvent Simulations of Villin Headpiece Folding
- (2009) Peter L. Freddolino et al. BIOPHYSICAL JOURNAL
- A one-dimensional free energy surface does not account for two-probe folding kinetics of protein α3D
- (2009) Feng Liu et al. JOURNAL OF CHEMICAL PHYSICS
- The transition state transit time of WW domain folding is controlled by energy landscape roughness
- (2009) Feng Liu et al. JOURNAL OF CHEMICAL PHYSICS
- Solvent Friction Changes the Folding Pathway of the Tryptophan Zipper TZ2
- (2009) Ranjani Narayanan et al. JOURNAL OF MOLECULAR BIOLOGY
- Molecules: What Kind of a Bag of Atoms?†
- (2009) Praveen D. Chowdary et al. JOURNAL OF PHYSICAL CHEMISTRY A
- Using generalized ensemble simulations and Markov state models to identify conformational states
- (2009) Gregory R. Bowman et al. METHODS
- The role of dynamic conformational ensembles in biomolecular recognition
- (2009) David D Boehr et al. Nature Chemical Biology
- Local conformational dynamics in -helices measured by fast triplet transfer
- (2009) B. Fierz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories
- (2009) H. S. Chung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Coordinate-dependent diffusion in protein folding
- (2009) R. B. Best et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations
- (2009) Frank Noé et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Amide I Two-Dimensional Infrared Spectroscopy of Proteins
- (2008) Ziad Ganim et al. ACCOUNTS OF CHEMICAL RESEARCH
- Ten-Microsecond Molecular Dynamics Simulation of a Fast-Folding WW Domain
- (2008) Peter L. Freddolino et al. BIOPHYSICAL JOURNAL
- Probability distributions of molecular observables computed from Markov models
- (2008) Frank Noé JOURNAL OF CHEMICAL PHYSICS
- Computing conformational free energy by deactivated morphing
- (2008) Sanghyun Park et al. JOURNAL OF CHEMICAL PHYSICS
- A Test on Peptide Stability of AMBER Force Fields with Implicit Solvation
- (2008) M. Scott Shell et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Measuring internal friction of an ultrafast-folding protein
- (2008) T. Cellmer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An experimental survey of the transition between two-state and downhill protein folding scenarios
- (2008) F. Liu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution
- (2008) O. F. Lange et al. SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started