Physics of protein–DNA interactions: mechanisms of facilitated target search

Dynamic Strategies for Target-Site Search by DNA-Binding Proteins

(2010) Mario A. Díaz de la Rosa et al.   BIOPHYSICAL JOURNAL

Facilitated DNA Search by Multidomain Transcription Factors: Cross Talk via a Flexible Linker

(2010) Dana Vuzman et al.   BIOPHYSICAL JOURNAL

Comparison of Kinetic and Dynamical Models of DNA−Protein Interaction and Facilitated Diffusion†

(2010) Ana-Maria Florescu et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Facilitated search of proteins on DNA: correlations are important

(2010) Rahul K. Das et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

An end to 40 years of mistakes in DNA–protein association kinetics?

(2009) Stephen E. Halford   BIOCHEMICAL SOCIETY TRANSACTIONS

Using the Bias from Flow to Elucidate Single DNA Repair Protein Sliding and Interactions with DNA

(2009) Yihan Lin et al.   BIOPHYSICAL JOURNAL

Fundamental Aspects of Protein−Protein Association Kinetics

(2009) G. Schreiber et al.   CHEMICAL REVIEWS

Diffusion of the Restriction Nuclease EcoRI along DNA

(2009) Donald C. Rau et al.   JOURNAL OF MOLECULAR BIOLOGY

Positively Charged Residues in DNA-Binding Domains of Structural Proteins Follow Sequence-specific Positions of DNA Phosphate Groups

(2009) A. G. Cherstvy   JOURNAL OF PHYSICAL CHEMISTRY B

How a protein searches for its site on DNA: the mechanism of facilitated diffusion

(2009) Leonid Mirny et al.   Journal of Physics A-Mathematical and Theoretical

Nonspecifically bound proteins spin while diffusing along DNA

(2009) Paul C Blainey et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Quantifying Hopping and Jumping in Facilitated Diffusion of DNA-Binding Proteins

(2009) C. Loverdo et al.   PHYSICAL REVIEW LETTERS

Searching Fast for a Target on DNA without Falling to Traps

(2009) O. Bénichou et al.   PHYSICAL REVIEW LETTERS

Tumor Suppressor p53 Slides on DNA with Low Friction and High Stability

(2008) Anahita Tafvizi et al.   BIOPHYSICAL JOURNAL

Charge-transport-mediated recruitment of DNA repair enzymes

(2008) Pak-Wing Fok et al.   JOURNAL OF CHEMICAL PHYSICS

Protein Sliding along DNA: Dynamics and Structural Characterization

(2008) Ohad Givaty et al.   JOURNAL OF MOLECULAR BIOLOGY

Protein−DNA Interactions:  Reaching and Recognizing the Targets

(2008) A. G. Cherstvy et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The Subdiffusive Targeting Problem

(2008) Joel D. Eaves et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Diffusion Constant of a Nonspecifically Bound Protein Undergoing Curvilinear Motion along DNA†

(2008) Biman Bagchi et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Visualizing one-dimensional diffusion of proteins along DNA

(2008) Jason Gorman et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT

(2008) J. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Apparent Directional Scanning for DNA Repair

(2007) Tong Zhao et al.   BIOPHYSICAL JOURNAL

Sampling the Cell with Anomalous Diffusion—The Discovery of Slowness

(2007) Gernot Guigas et al.   BIOPHYSICAL JOURNAL