A mesoscopic model for protein enzymatic dynamics in solution

Nanoscale swimmers: hydrodynamic interactions and propulsion of molecular machines

(2010) T. Sakaue et al.   EUROPEAN PHYSICAL JOURNAL B

Macromolecular dynamics in crowded environments

(2010) Carlos Echeverria et al.   JOURNAL OF CHEMICAL PHYSICS

Molecular Simulation ofab InitioProtein Folding for a Millisecond Folder NTL9(1−39)

(2010) Vincent A. Voelz et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Tracing entire operation cycles of molecular motor hepatitis C virus helicase in structurally resolved dynamical simulations

(2010) H. Flechsig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Atomic-Level Characterization of the Structural Dynamics of Proteins

(2010) D. E. Shaw et al.   SCIENCE

Adenylate Kinase and AMP Signaling Networks: Metabolic Monitoring, Signal Communication and Body Energy Sensing

(2009) Petras Dzeja et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Zipping and Unzipping of Adenylate Kinase: Atomistic Insights into the Ensemble of Open↔Closed Transitions

(2009) Oliver Beckstein et al.   JOURNAL OF MOLECULAR BIOLOGY

Computation of conformational transitions in proteins by virtual atom molecular mechanics as validated in application to adenylate kinase

(2009) A. Korkut et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conformational transitions in DNA polymerase I revealed by single-molecule FRET

(2009) Y. Santoso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mesoscale modeling of molecular machines: Cyclic dynamics and hydrodynamical fluctuations

(2008) Andrew Cressman et al.   PHYSICAL REVIEW E

Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms

(2008) K.-i. Okazaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA