Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Ecological constraints on the first prehistoric farmers in Europe

(2013) William E. Banks et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

(2013) Erik Axelsson et al.   NATURE

OsLG1 regulates a closed panicle trait in domesticated rice

(2013) Takashige Ishii et al.   NATURE GENETICS

Deep Sequencing of RNA from Ancient Maize Kernels

(2013) Sarah L. Fordyce et al.   PLoS One

Next generation sequencing of DNA in 3300-year-old charred cereal grains

(2012) Sandra L. Bunning et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Phylogeographic analysis of barley DNA as evidence for the spread of Neolithic agriculture through Europe

(2012) Glynis Jones et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Archaeogenomic Evidence of Punctuated Genome Evolution in Gossypium

(2012) S. A. Palmer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis

(2012) Keith R. Oliver et al.   Ecology and Evolution

The blossoming of plant archaeogenetics

(2011) Sarah A. Palmer et al.   ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER

Local Selection Across a Latitudinal Gradient Shapes Nucleotide Diversity in Balsam Poplar,Populus balsamiferaL

(2011) Stephen R. Keller et al.   GENETICS

Genetic analysis of wheat domestication and evolution under domestication

(2011) Zvi Peleg et al.   JOURNAL OF EXPERIMENTAL BOTANY

Adaptive evolution of the Populus tremula photoperiod pathway

(2011) DAVID HALL et al.   MOLECULAR ECOLOGY

ARCHAEOLOGICAL DATA REVEAL SLOW RATES OF EVOLUTION DURING PLANT DOMESTICATION

(2010) Michael D. Purugganan et al.   EVOLUTION

The history and disposition of transposable elements in polyploid Gossypium

(2010) Guanjing Hu et al.   GENOME

Integrating the processes in the evolutionary system of domestication

(2010) R. Allaby   JOURNAL OF EXPERIMENTAL BOTANY

Consilience of genetics and archaeobotany in the entangled history of rice

(2010) Dorian Q. Fuller et al.   Archaeological and Anthropological Sciences

Hordeivirus Replication, Movement, and Pathogenesis

(2009) Andrew O. Jackson et al.   Annual Review of Phytopathology

Transposable elements: powerful facilitators of evolution

(2009) Keith R. Oliver et al.   BIOESSAYS

Population Genomics of the Arabidopsis thaliana Flowering Time Gene Network

(2009) J. M. Flowers et al.   MOLECULAR BIOLOGY AND EVOLUTION

Archaeogenetic Evidence of Ancient Nubian Barley Evolution from Six to Two-Row Indicates Local Adaptation

(2009) Sarah A. Palmer et al.   PLoS One

The origin and evolution of fragrance in rice (Oryza sativa L.)

(2009) M. J. Kovach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A simulation of the effect of inbreeding on crop domestication genetics with comments on the integration of archaeobotany and genetics: a reply to Honne and Heun

(2009) Robin G. Allaby et al.   VEGETATION HISTORY AND ARCHAEOBOTANY

Plant virus emergence and evolution: Origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control

(2009) Roger A.C. Jones   VIRUS RESEARCH

Founder effect, drift, and adaptive change in domestic crop use in early Neolithic Europe

(2008) James Conolly et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Population-Based Resequencing Reveals That the Flowering Time Adaptation of Cultivated Barley Originated East of the Fertile Crescent

(2008) H. Jones et al.   MOLECULAR BIOLOGY AND EVOLUTION

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

A Genomic Scan for Selection Reveals Candidates for Genes Involved in the Evolution of Cultivated Sunflower (Helianthus annuus)

(2008) M. A. Chapman et al.   PLANT CELL

The genetic expectations of a protracted model for the origins of domesticated crops

(2008) R. G. Allaby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The complex origins of domesticated crops in the Fertile Crescent

(2008) Terence A. Brown et al.   TRENDS IN ECOLOGY & EVOLUTION

The spread of Neolithic plant economies from the Near East to northwest Europe: a phylogenetic analysis

(2007) Fiona Coward et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE