Observing micro-evolutionary processes of viral populations at multiple scales

Accumulation of nucleotide substitutions occurring during experimental transmission of foot-and-mouth disease virus

(2012) N. Juleff et al.   JOURNAL OF GENERAL VIROLOGY

New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels

(2012) K. A. Lythgoe et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The mode and tempo of hepatitis C virus evolution within and among hosts

(2011) Rebecca R Gray et al.   BMC EVOLUTIONARY BIOLOGY

A simple method for the parallel deep sequencing of full influenza A genomes

(2011) Marie-Louise Kampmann et al.   JOURNAL OF VIROLOGICAL METHODS

Contribution of Intra- and Interhost Dynamics to Norovirus Evolution

(2011) R. A. Bull et al.   JOURNAL OF VIROLOGY

Role of donor genital tract HIV-1 diversity in the transmission bottleneck

(2011) D. I. Boeras et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Foot-and-mouth disease in Bulgaria

(2011) B. Valdazo-Gonzalez et al.   VETERINARY RECORD

Comparative sequence analysis of representative foot-and-mouth disease virus genomes from Southeast Asia

(2011) Nor Faizah Abdul-Hamid et al.   VIRUS GENES

Viral mutation and substitution: units and levels

(2011) Robert Belshaw et al.   Current Opinion in Virology

Beyond the Consensus: Dissecting Within-Host Viral Population Diversity of Foot-and-Mouth Disease Virus by Using Next-Generation Genome Sequencing

(2010) C. F. Wright et al.   JOURNAL OF VIROLOGY

Hepatitis C Virus Transmission Bottlenecks Analyzed by Deep Sequencing

(2010) G. P. Wang et al.   JOURNAL OF VIROLOGY

Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies

(2010) R. Sanjuan   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transmission of Single HIV-1 Genomes and Dynamics of Early Immune Escape Revealed by Ultra-Deep Sequencing

(2010) Will Fischer et al.   PLoS One

Sequence data and evidence of possible airborne spread in the 2001 foot-and-mouth disease epidemic in the UK

(2010) G. A. Konig et al.   VETERINARY RECORD

Low-Abundance Drug-Resistant Viral Variants in Chronically HIV-Infected, Antiretroviral Treatment–Naive Patients Significantly Impact Treatment Outcomes

(2009) Birgitte B. Simen et al.   JOURNAL OF INFECTIOUS DISEASES

Ultra‐Deep Pyrosequencing of Hepatitis B Virus Quasispecies from Nucleoside and Nucleotide Reverse‐Transcriptase Inhibitor (NRTI)–Treated Patients and NRTI‐Naive Patients

(2009) Severine Margeridon‐Thermet et al.   JOURNAL OF INFECTIOUS DISEASES

Development and validation of a duplex quantitative real-time RT-PCR assay for simultaneous detection and quantitation of foot-and-mouth disease viral positive-stranded RNAs and negative-stranded RNAs

(2009) Yong Li et al.   JOURNAL OF VIROLOGICAL METHODS

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses

(2009) G. Thebaud et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

(2009) Gabriella Rozera et al.   Retrovirology

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS

Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus

(2008) E. M Cottam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Analysis of Foot-and-mouth disease virus nucleotide sequence variation within naturally infected epithelium

(2008) Eleanor M. Cottam et al.   VIRUS RESEARCH

Viral Population Estimation Using Pyrosequencing

(2008) Nicholas Eriksson et al.   PLoS Computational Biology

Transmission Pathways of Foot-and-Mouth Disease Virus in the United Kingdom in 2007

(2008) Eleanor M. Cottam et al.   PLoS Pathogens