Controlling for non-independence in comparative analysis of patterns across populations within species

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Genetic and environmental contributions to variation and population divergence in a broad-spectrum foliar defence of Eucalyptus tricarpa

(2010) Rose L. Andrew et al.   ANNALS OF BOTANY

Overrun by the neighbors: Landscape context affects strength and sign of local adaptation

(2010) Ayco J. M. Tack et al.   ECOLOGY

Transferring Atlantic maritime pine improved material to a region with marked Mediterranean influence in inland NW Spain: a likelihood-based approach on spatially adjusted field data

(2010) Raúl de la Mata et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

QUANTIFYING THE PLEISTOCENE HISTORY OF THE OAK GALL PARASITOID CECIDOSTIBA FUNGOSA USING TWENTY INTRON LOCI

(2010) Konrad Lohse et al.   EVOLUTION

Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations

(2010) P. Beerli et al.   GENETICS

General quantitative genetic methods for comparative biology: phylogenies, taxonomies and multi-trait models for continuous and categorical characters

(2010) J. D. HADFIELD et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Concordant phylogeography and cryptic speciation in two Western Palaearctic oak gall parasitoid species complexes

(2010) JAMES A. NICHOLLS et al.   MOLECULAR ECOLOGY

Differences in spawning date between populations of common frog reveal local adaptation

(2010) A. B. Phillimore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Local adaptation in Trinidadian guppies alters ecosystem processes

(2010) Ronald D. Bassar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

(2009) Laura S. Kubatko et al.   BIOINFORMATICS

Natural selection drives the fine-scale divergence of a coevolutionary arms race involving a long-mouthed weevil and its obligate host plant

(2009) Hirokazu Toju   BMC EVOLUTIONARY BIOLOGY

Ecological impacts of genotypic diversity in the clonal seagrassZostera marina

(2009) A. Randall Hughes et al.   ECOLOGY

A geographic mosaic of genetic variation within a foundation tree species and its community-level consequences

(2009) Robert C. Barbour et al.   ECOLOGY

Habitat quality and among-population differentiation in reproductive effort and flowering phenology in the perennial herb Primula farinosa

(2009) Per Toräng et al.   EVOLUTIONARY ECOLOGY

The seven deadly sins of comparative analysis

(2009) R. P. FRECKLETON   JOURNAL OF EVOLUTIONARY BIOLOGY

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

Host Niches and Defensive Extended Phenotypes Structure Parasitoid Wasp Communities

(2009) Richard Bailey et al.   PLOS BIOLOGY

Comparative Methods with Sampling Error and Within‐Species Variation: Contrasts Revisited and Revised

(2008) Joseph Felsenstein   AMERICAN NATURALIST

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation

(2008) Jean-Marie Cornuet et al.   BIOINFORMATICS

TREE HYBRIDIZATION AND GENOTYPIC VARIATION DRIVE CRYPTIC SPECIATION OF A SPECIALIST MITE HERBIVORE

(2008) Luke M. Evans et al.   EVOLUTION

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

(2008) A ECKERT et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Wild pedigrees: the way forward

(2008) J.M Pemberton   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Space versus phylogeny: disentangling phylogenetic and spatial signals in comparative data

(2008) R. P Freckleton et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Extending Genomics to Natural Communities and Ecosystems

(2008) T. G. Whitham et al.   SCIENCE

Phylogenetic Signal, Evolutionary Process, and Rate

(2008) Liam J. Revell et al.   SYSTEMATIC BIOLOGY

The distribution of the coalescence time and the number of pairwise nucleotide differences in the “isolation with migration” model

(2007) Hilde M. Wilkinson-Herbots   THEORETICAL POPULATION BIOLOGY