Batch effects in the BRLMM genotype calling algorithm influence GWAS results for the Affymetrix 500K array

Quantifying uncertainty in genotype calls

(2009) Benilton S. Carvalho et al.   BIOINFORMATICS

A Genome-wide Association Study Identifies Three Loci Associated with Mean Platelet Volume

(2008) Christa Meisinger et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Non-random error in genotype calling procedures: Implications for family-based and case-control genome-wide association studies

(2008) Richard J.L. Anney et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

(2008) Huixiao Hong et al.   BMC BIOINFORMATICS

Appropriate data cleaning methods for genome-wide association study

(2008) Taku Miyagawa et al.   JOURNAL OF HUMAN GENETICS

Progress and challenges in genome-wide association studies in humans

(2008) Peter Donnelly   NATURE

Genome-wide association studies: progress and potential for drug discovery and development

(2008) Stephen F. Kingsmore et al.   NATURE REVIEWS DRUG DISCOVERY

Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33

(2008) B. Gold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays

(2008) Shin Lin et al.   GENOME BIOLOGY