4.2 Article

Genomewide association study of atazanavir pharmacokinetics and hyperbilirubinemia in AIDS Clinical Trials Group protocol A5202

Journal

PHARMACOGENETICS AND GENOMICS
Volume 24, Issue 4, Pages 195-203

Publisher

LIPPINCOTT WILLIAMS & WILKINS
DOI: 10.1097/FPC.0000000000000034

Keywords

atazanavir; pharmacokinetics; UGT1A1; pharmacogenomics; HIV

Funding

  1. National Institute of Allergy and Infectious Diseases (NIAID) [U01AI068636]
  2. National Institute of Mental Health (NIMH)
  3. National Institute of Dental and Craniofacial Research (NIDCR)
  4. AIDS Clinical Trials Group
  5. National Institute of Allergy and Infectious Diseases [AI-068636, AI-038858, AI-068634, AI-038855, AI-069439, TR-000445, AI-054999, AI-077505, BRS-ACURE-06-00140-T001]
  6. NIAID [AI-069439, AI-069477, AI-027675, AI-073961, AI-069474, AI-069432, AI-069513, AI-069423, AI-050410, AI-069452, AI-069450, AI-054907, AI-069428, AI-069467, AI-045008, AI-069495, AI-069415, AI-069556, AI-069484, AI-069424, AI-069532, AI-069419, AI-069471, AI-025859, AI-069418]
  7. National Center for Research Resources (NCRR) [RR-00051, RR-00046, RR-025747, RR-025777, RR-024996, RR-024156, RR-024160]
  8. Bristol Myers Squibb Co.
  9. GlaxoSmithKline Inc.
  10. NIAID. [AI-038858, AI-050409, AI-069502, AI-069434, AI-069465, AI-069501, AI-046376, AI-072626, AI-034853, AI-069472, AI-069447, AI-032782, AI-027658, AI-027666, AI-027661, AI-058740, AI-046370, AI-069511, AI-069470, AI-069494]

Ask authors/readers for more resources

Background Atazanavir-associated hyperbilirubinemia can cause premature discontinuation of atazanavir and avoidance of its initial prescription. We used genomewide genotyping and clinical data to characterize determinants of atazanavir pharmacokinetics and hyperbilirubinemia in AIDS Clinical Trials Group protocol A5202. Methods Plasma atazanavir pharmacokinetics and indirect bilirubin concentrations were characterized in HIV-1-infected patients randomized to atazanavir/ritonavir-containing regimens. A subset had genomewide genotype data available. Results Genomewide assay data were available from 542 participants, of whom 475 also had data on estimated atazanavir clearance and relevant covariates available. Peak bilirubin concentration and relevant covariates were available for 443 participants. By multivariate analysis, higher peak on-treatment bilirubin levels were found to be associated with the UGT1A1 rs887829 T allele (P=6.4x10(-12)), higher baseline hemoglobin levels (P=4.9x10(-13)), higher baseline bilirubin levels (P=6.7x10(-12)), and slower plasma atazanavir clearance (P=8.6x10(-11)). For peak bilirubin levels greater than 3.0 mg/dl, the positive predictive value of a baseline bilirubin level of 0.5 mg/dl or higher with hemoglobin concentrations of 14 g/dl or higher was 0.51, which increased to 0.85 with rs887829 TT homozygosity. For peak bilirubin levels of 3.0 mg/dl or lower, the positive predictive value of a baseline bilirubin level less than 0.5 mg/dl with a hemoglobin concentration less than 14 g/dl was 0.91, which increased to 0.96 with rs887829 CC homozygosity. No polymorphism predicted atazanavir pharmacokinetics at genomewide significance. Conclusion Atazanavir-associated hyperbilirubinemia is best predicted by considering UGT1A1 genotype, baseline bilirubin level, and baseline hemoglobin level in combination. Use of ritonavir as a pharmacokinetic enhancer may have abrogated genetic associations with atazanavir pharmacokinetics.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.2
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Genetics & Heredity

Amino Acid Variation in HLA Class II Proteins Is a Major Determinant of Humoral Response to Common Viruses

Christian Hammer, Martin Begemann, Paul J. McLaren, Istvan Bartha, Angelika Michel, Beate Klose, Corinna Schmitt, Tim Waterboer, Michael Pawlita, Thomas F. Schulz, Hannelore Ehrenreich, Jacques Fellay

AMERICAN JOURNAL OF HUMAN GENETICS (2015)

Article Immunology

Host genetic predictors of the kynurenine pathway of tryptophan catabolism among treated HIV-infected Ugandans

Sulggi A. Lee, Joel A. Mefford, Yong Huang, John S. Witte, Jeffrey N. Martin, David W. Haas, Paul J. Mclaren, Taisei Mushiroda, Michiaki Kubo, Helen Byakwaga, Peter W. Hunt, Deanna L. Kroetz

Article Microbiology

Guanylate Binding Protein (GBP) 5 Is an Interferon-Inducible Inhibitor of HIV-1 Infectivity

Christian Krapp, Dominik Hotter, Ali Gawanbacht, Paul J. McLaren, Silvia F. Kluge, Christina M. Stuerzel, Katharina Mack, Elisabeth Reith, Susanne Engelhart, Angela Ciuffi, Veit Hornung, Daniel Sauter, Amalio Telenti, Frank Kirchhoff

CELL HOST & MICROBE (2016)

Article Genetics & Heredity

Privacy-preserving genomic testing in the clinic: a model using HIV treatment

Paul J. McLaren, Jean Louis Raisaro, Manel Aouri, Margalida Rotger, Erman Ayday, Istvan Bartha, Maria B. Delgado, Yannick Vallet, Huldrych F. Gunthard, Matthias Cavassini, Hansjakob Furrer, Thanh Doco-Lecompte, Catia Marzolini, Patrick Schmid, Caroline Di Benedetto, Laurent A. Decosterd, Jacques Fellay, Jean-Pierre Hubaux, Amalio Telenti

GENETICS IN MEDICINE (2016)

Article Multidisciplinary Sciences

Identification of Siglec-1 null individuals infected with HIV-1

Javier Martinez-Picado, Paul J. McLaren, Itziar Erkizia, Maureen P. Martin, Susana Benet, Margalida Rotger, Judith Dalmau, Dan Ouchi, Steven M. Wolinsky, Sudhir Penugonda, Huldrych F. Gunthard, Jacques Fellay, Mary Carrington, Nuria Izquierdo-Useros, Amalio Telenti

NATURE COMMUNICATIONS (2016)

Article Immunology

Exome Sequencing Reveals Primary Immunodeficiencies in Children with Community-Acquired Pseudomonas aeruginosa Sepsis

Samira Asgari, Paul J. McLaren, Jane Peake, Melanie Wong, Richard Wong, Istvan Bartha, Joshua R. Francis, Katia Abarca, Kyra A. Gelderman, Philipp Agyeman, Christoph Aebi, Christoph Berger, Jacques Fellay, Luregn J. Schlapbach

FRONTIERS IN IMMUNOLOGY (2016)

Article Biochemical Research Methods

Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control

Istvan Bartha, Paul J. McLaren, Chanson Brumme, Richard Harrigan, Amalio Telenti, Jacques Fellay

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Multidisciplinary Sciences

HIV peptidome-wide association study reveals patient-specific epitope repertoires associated with HIV control

Jatin Arora, Paul J. McLare, Nimisha Chaturvedi, Mary Carrington, Jacques Fellay, Tobias L. Lenz

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Review Genetics & Heredity

Minding the gap in HIV host genetics: opportunities and challenges

Shanelle N. Gingras, David Tang, Jeffrey Tuff, Paul J. McLaren

HUMAN GENETICS (2020)

Review Genetics & Heredity

HIV-1 and human genetic variation

Paul J. McLaren, Jacques Fellay

Summary: Research has shown how HIV infection affects human immunity and how human genetic variation impacts our response to HIV. Studies have also found that HIV integrates into the human genome and explored new therapeutic approaches for HIV infection.

NATURE REVIEWS GENETICS (2021)

Article Multidisciplinary Sciences

Africa-specific human genetic variation near CHD1L associates with HIV-1 load

Paul J. J. McLaren, Immacolata Porreca, Gennaro Iaconis, Hoi Ping Mok, Subhankar Mukhopadhyay, Emre Karakoc, Sara Cristinelli, Cristina Pomilla, Istvan Bartha, Christian W. W. Thorball, Riley H. H. Tough, Paolo Angelino, Cher S. S. Kiar, Tommy Carstensen, Segun Fatumo, Tarryn Porter, Isobel Jarvis, William C. C. Skarnes, Andrew Bassett, Marianne K. K. DeGorter, Mohana Prasad Sathya Moorthy, Jeffrey F. F. Tuff, Eun-Young Kim, Miriam Walter, Lacy M. M. Simons, Arman Bashirova, Susan Buchbinder, Mary Carrington, Andrea Cossarizza, Andrea De Luca, James J. J. Goedert, David B. B. Goldstein, David W. W. Haas, Joshua T. T. Herbeck, Eric O. O. Johnson, Pontiano Kaleebu, William Kilembe, Gregory D. D. Kirk, Neeltje A. A. Kootstra, Alex H. H. Kral, Olivier Lambotte, Ma Luo, Simon Mallal, Javier Martinez-Picado, Laurence Meyer, Jose M. Miro, Pravi Moodley, Ayesha A. A. Motala, James I. I. Mullins, Kireem Nam, Niels Obel, Fraser Pirie, Francis A. A. Plummer, Guido Poli, Matthew A. A. Price, Andri Rauch, Ioannis Theodorou, Alexandra Trkola, Bruce D. D. Walker, Cheryl A. A. Winkler, Jean-Francois Zagury, Stephen B. B. Montgomery, Angela Ciuffi, Judd F. F. Hultquist, Steven M. M. Wolinsky, Gordon Dougan, Andrew M. L. Lever, Deepti Gurdasani, Harriet Groom, Manjinder S. S. Sandhu, Jacques Fellay

Summary: This study identified a previously undescribed association signal on chromosome 1 that is specific to African populations and is associated with lower set-point viral load in individuals living with HIV-1. Experimental studies showed that the gene CHD1L, which is involved in DNA repair, may play a role in limiting HIV-1 replication.

NATURE (2023)

Correction Multidisciplinary Sciences

Africa-specific human genetic variation near CHD1L associates with HIV-1 load (vol 620, pg 1025, 2023)

Paul J. McLaren, Immacolata Porreca, Gennaro Iaconis, Hoi Ping Mok, Subhankar Mukhopadhyay, Emre Karakoc, Sara Cristinelli, Cristina Pomilla, Istvan Bartha, Christian W. Thorball, Riley H. Tough, Paolo Angelino, Cher S. Kiar, Tommy Carstensen, Segun Fatumo, Tarryn Porter, Isobel Jarvis, William C. Skarnes, Andrew Bassett, Marianne K. DeGorter, Mohana Prasad Sathya Moorthy, Jeffrey F. Tuff, Eun-Young Kim, Miriam Walter, Lacy M. Simons, Arman Bashirova, Susan Buchbinder, Mary Carrington, Andrea Cossarizza, Andrea De Luca, James J. Goedert, David B. Goldstein, David W. Haas, Joshua T. Herbeck, Eric O. Johnson, Pontiano Kaleebu, William Kilembe, Gregory D. Kirk, Neeltje A. Kootstra, Alex H. Kral, Olivier Lambotte, Ma Luo, Simon Mallal, Javier Martinez-Picado, Laurence Meyer, Jose M. Miro, Pravi Moodley, Ayesha A. Motala, James I. Mullins, Kireem Nam, Niels Obel, Fraser Pirie, Francis A. Plummer, Guido Poli, Matthew A. Price, Andri Rauch, Ioannis Theodorou, Alexandra Trkola, Bruce D. Walker, Cheryl A. Winkler, Jean-Francois Zagury, Stephen B. Montgomery, Angela Ciuffi, Judd F. Hultquist, Steven M. Wolinsky, Gordon Dougan, Andrew M. L. Lever, Deepti Gurdasani, Harriet Groom, Manjinder S. Sandhu, Jacques Fellay

NATURE (2023)

Article Genetics & Heredity

No Evidence for Association of β-Defensin Genomic Copy Number with HIV Susceptibility, HIV Load during Clinical Latency, or Progression to AIDS

Razan Abujaber, Patrick R. Shea, Paul J. McLaren, Shabir Lakhi, Jill Gilmour, Susan Allen, Jacques Fellay, Edward J. Hollox

ANNALS OF HUMAN GENETICS (2017)

Article Biochemistry & Molecular Biology

Systemic inflammation before and after antiretroviral therapy initiation as a predictor of immune response among HIV-infected individuals in Manitoba

Quinlan Richert, Adriana Trajtman, Luisa Arroyave, Julia Toews, Marissa Becker, Ken Kasper, Paul McLaren, Zulma Rueda, Yoav Keynan

CYTOKINE (2017)

Article Genetics & Heredity

A Genome-wide Association Study Identifies Risk Alleles in Plasminogen and P4HA2 Associated with Giant Cell Arteritis

F. David Carmona, Augusto Vaglio, Sarah L. Mackie, Jose Hernandez-Rodriguez, Paul A. Monach, Santos Castaneda, Roser Solans, Inmaculada C. Morado, Javier Narvaez, Marc Ramentol-Sintas, Colin T. Pease, Bhaskar Dasgupta, Richard Watts, Nader Khalidi, Carol A. Langford, Steven Ytterberg, Luigi Boiardi, Lorenzo Beretta, Marcello Govoni, Giacomo Emmi, Francesco Bonatti, Marco A. Cimmino, Torsten Witte, Thomas Neumann, Julia Holle, Verena Schoenau, Laurent Sailler, Thomas Papo, Julien Haroche, Alfred Mahr, Luc Mouthon, Oyvind Molberg, Andreas P. Diamantopoulos, Alexandre Voskuyl, Elisabeth Brouwer, Thomas Daikeler, Christoph T. Berger, Eamonn S. Molloy, Lorraine O'Neill, Daniel Blockmans, Benedicte A. Lie, Paul Mclaren, Timothy J. Vyse, Cisca Wijmenga, Yannick Allanore, Bobby P. C. Koeleman, Jennifer H. Barrett, Maria C. Cid, Carlo Salvarani, Peter A. Merkel, Ann W. Morgan, Miguel A. Gonzalez-Gay, Javier Martin

AMERICAN JOURNAL OF HUMAN GENETICS (2017)

No Data Available