Graph methods for the investigation of metabolic networks in parasitology

Network-based prediction of metabolic enzymes' subcellular localization

(2009) S. Mintz-Oron et al.   BIOINFORMATICS

Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi

(2009) Seth B Roberts et al.   BMC Systems Biology

LeishCyc: a biochemical pathways database for Leishmania major

(2009) Maria A Doyle et al.   BMC Systems Biology

TICL - a web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics

(2009) Alexey V. Antonov et al.   FEBS Journal

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2009) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization

(2008) Torsten Blum et al.   BIOINFORMATICS

TrypanoCyc – a metabolic pathway database for Trypanosoma brucei

(2008) Bridget Chukualim et al.   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

An Introduction to Metabolic Networks and Their Structural Analysis

(2008) V. Lacroix et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Glucose-induced Remodeling of Intermediary and Energy Metabolism in ProcyclicTrypanosoma brucei

(2008) Virginie Coustou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major

(2008) Arvind K Chavali et al.   Molecular Systems Biology

metaTIGER: a metabolic evolution resource

(2008) John W. Whitaker et al.   NUCLEIC ACIDS RESEARCH

MassTRIX: mass translator into pathways

(2008) K. Suhre et al.   NUCLEIC ACIDS RESEARCH

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways

(2008) S. Brohee et al.   NUCLEIC ACIDS RESEARCH

Reactome knowledgebase of human biological pathways and processes

(2008) L. Matthews et al.   NUCLEIC ACIDS RESEARCH

Large-scale reconstruction and phylogenetic analysis of metabolic environments

(2008) E. Borenstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caveat emptor: limitations of the automated reconstruction of metabolic pathways in Plasmodium

(2008) Hagai Ginsburg   TRENDS IN PARASITOLOGY

An environmental perspective on metabolism

(2007) Thomas Handorf et al.   JOURNAL OF THEORETICAL BIOLOGY