Aflatoxin B1Induced Compositional Changes in Gut Microbial Communities of Male F344 Rats

Microbial Community Composition and Diversity via 16S rRNA Gene Amplicons: Evaluating the Illumina Platform

(2015) Lucas Sinclair et al.   PLoS One

Gut Microbiome Phenotypes Driven by Host Genetics Affect Arsenic Metabolism

(2014) Kun Lu et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

Arsenic Exposure Perturbs the Gut Microbiome and Its Metabolic Profile in Mice: An Integrated Metagenomics and Metabolomics Analysis

(2014) Kun Lu et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Meta-analyses of human gut microbes associated with obesity and IBD

(2014) William A. Walters et al.   FEBS LETTERS

Monitoring the developmental impact of copper and silver nanoparticle exposure in Drosophila and their microbiomes

(2014) Xu Han et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Gut Microbiome Perturbations Induced by Bacterial Infection Affect Arsenic Biotransformation

(2013) Kun Lu et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Aflatoxin B1modulates the expression of phenotypic markers and cytokines by splenic lymphocytes of male F344 rats

(2013) Guoqing Qian et al.   JOURNAL OF APPLIED TOXICOLOGY

Chronic Ethanol Consumption Alters Mammalian Gastrointestinal Content Metabolites

(2013) Guoxiang Xie et al.   JOURNAL OF PROTEOME RESEARCH

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Metagenomic Analyses of Alcohol Induced Pathogenic Alterations in the Intestinal Microbiome and the Effect of Lactobacillus rhamnosus GG Treatment

(2013) Lara Bull-Otterson et al.   PLoS One

Environmental Particulate Matter Induces Murine Intestinal Inflammatory Responses and Alters the Gut Microbiome

(2013) Lisa Kish et al.   PLoS One

Gut microbiota limits heavy metals burden caused by chronic oral exposure

(2013) Jérôme Breton et al.   TOXICOLOGY LETTERS

Modulation of Intestinal Functions Following Mycotoxin Ingestion: Meta-Analysis of Published Experiments in Animals

(2013) Bertrand Grenier et al.   Toxins

Ecotoxicology inside the gut: impact of heavy metals on the mouse microbiome

(2013) Jérôme Breton et al.   BMC Pharmacology & Toxicology

Ingestion of metal-nanoparticle contaminated food disrupts endogenous microbiota in zebrafish (Danio rerio)

(2012) Daniel L. Merrifield et al.   ENVIRONMENTAL POLLUTION

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels

(2012) Brant C. Faircloth et al.   PLoS One

Succession in the Gut Microbiome following Antibiotic and Antibody Therapies for Clostridium difficile

(2012) Gregory L. Peterfreund et al.   PLoS One

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Comprehensive Assessment of Maize Aflatoxin Levels in Eastern Kenya, 2005–2007

(2011) Johnni H. Daniel et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Present and future directions of translational research on aflatoxin and hepatocellular carcinoma. A review

(2011) Gerald N. Wogan et al.   Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment

The intestinal microbiota and chronic disorders of the gut

(2011) Andrew W. DuPont et al.   Nature Reviews Gastroenterology & Hepatology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Long-term impacts of antibiotic exposure on the human intestinal microbiota

(2010) C. Jernberg et al.   MICROBIOLOGY-SGM

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Short-Term Antibiotic Treatment Has Differing Long-Term Impacts on the Human Throat and Gut Microbiome

(2010) Hedvig E. Jakobsson et al.   PLoS One

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Aflatoxin B1 in poultry: Toxicology, metabolism and prevention

(2010) Sumit Rawal et al.   RESEARCH IN VETERINARY SCIENCE

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Gut microbiome modulates the toxicity of hydrazine: a metabonomic study

(2009) Jonathan Swann et al.   Molecular BioSystems

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE