freeQuant: A Mass Spectrometry Label-Free Quantification Software Tool for Complex Proteome Analysis

Characterization, Design, and Function of the Mitochondrial Proteome: From Organs to Organisms

(2013) Christopher Lotz et al.   JOURNAL OF PROTEOME RESEARCH

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

NSI and NSMT: usages of MS/MS fragment ion intensity for sensitive differential proteome detection and accurate protein fold change calculation in relative label-free proteome quantification

(2012) Qi Wu et al.   ANALYST

ICT1 comes to the rescue of mitochondrial ribosomes

(2010) Md Emdadul Haque et al.   EMBO JOURNAL

A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome

(2010) Ricarda Richter et al.   EMBO JOURNAL

Phosphoproteome Analysis Reveals Regulatory Sites in Major Pathways of Cardiac Mitochondria

(2010) Ning Deng et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative proteomics and biomarker discovery in human cancer

(2009) Yingchun Zhao et al.   Expert Review of Proteomics

Cardiac hypertrophy in mice with long-chain acyl-CoA dehydrogenase or very long-chain acyl-CoA dehydrogenase deficiency

(2009) Keith B Cox et al.   LABORATORY INVESTIGATION

Altered Proteome Biology of Cardiac Mitochondria Under Stress Conditions

(2008) Jun Zhang et al.   JOURNAL OF PROTEOME RESEARCH

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

A quantitative analysis software tool for mass spectrometry–based proteomics

(2008) Sung Kyu Park et al.   NATURE METHODS

A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen

(2008) John M. Asara et al.   PROTEOMICS

Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria

(2008) Jun Zhang et al.   PROTEOMICS