Quantifying MCMC Exploration of Phylogenetic Tree Space

SPR Distance Computation for Unrooted Trees

(2017) Glenn Hickey et al.   Evolutionary Bioinformatics

Supertrees Based on the Subtree Prune-and-Regraft Distance

(2014) Christopher Whidden et al.   SYSTEMATIC BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Fixed-Parameter Algorithms for Maximum Agreement Forests

(2013) Chris Whidden et al.   SIAM JOURNAL ON COMPUTING

Efficient Exploration of the Space of Reconciled Gene Trees

(2013) Gergely J. Szöllősi et al.   SYSTEMATIC BIOLOGY

The Estimation of Tree Posterior Probabilities Using Conditional Clade Probability Distributions

(2013) Bret Larget   SYSTEMATIC BIOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Fast Convergence of Markov Chain Monte Carlo Algorithms for Phylogenetic Reconstruction with Homogeneous Data on Closely Related Species

(2011) Daniel Štefankovič et al.   SIAM JOURNAL ON DISCRETE MATHEMATICS

Guided Tree Topology Proposals for Bayesian Phylogenetic Inference

(2011) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

A Bayesian Perspective on a Non-parsimonious Parsimony Model

(2008) John P. Huelsenbeck et al.   SYSTEMATIC BIOLOGY

Efficiency of Markov Chain Monte Carlo Tree Proposals in Bayesian Phylogenetics

(2008) Clemens Lakner et al.   SYSTEMATIC BIOLOGY