A comprehensive survey of non-canonical splice sites in the human transcriptome
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A comprehensive survey of non-canonical splice sites in the human transcriptome
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 42, Issue 16, Pages 10564-10578
Publisher
Oxford University Press (OUP)
Online
2014-08-15
DOI
10.1093/nar/gku744
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Pick one, but be quick: 5' splice sites and the problems of too many choices
- (2013) X. Roca et al. GENES & DEVELOPMENT
- Systematical identification of splicing regulatory cis-elements and cognate trans-factors
- (2013) Yang Wang et al. METHODS
- Systematic evaluation of spliced alignment programs for RNA-seq data
- (2013) Pär G Engström et al. NATURE METHODS
- OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds
- (2013) Jie Wu et al. NUCLEIC ACIDS RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- A complex network of factors with overlapping affinities represses splicing through intronic elements
- (2012) Yang Wang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rules
- (2012) Yang Wang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Update on activities at the Universal Protein Resource (UniProt) in 2013
- (2012) NUCLEIC ACIDS RESEARCH
- Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues
- (2012) J. Merkin et al. SCIENCE
- The spliceosome: a flexible, reversible macromolecular machine
- (2012) Aaron A. Hoskins et al. TRENDS IN BIOCHEMICAL SCIENCES
- AlleleSeq: analysis of allele-specific expression and binding in a network framework
- (2011) J. Rozowsky et al. Molecular Systems Biology
- Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
- (2011) André E Minoche et al. GENOME BIOLOGY
- SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data
- (2011) Songbo Huang et al. Frontiers in Genetics
- ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping
- (2010) Shao-Ke Lou et al. BIOINFORMATICS
- A survey of sequence alignment algorithms for next-generation sequencing
- (2010) H. Li et al. BRIEFINGS IN BIOINFORMATICS
- Deciphering the splicing code
- (2010) Yoseph Barash et al. NATURE
- Detection of splice junctions from paired-end RNA-seq data by SpliceMap
- (2010) K. F. Au et al. NUCLEIC ACIDS RESEARCH
- MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
- (2010) Kai Wang et al. NUCLEIC ACIDS RESEARCH
- Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro
- (2010) Jonathan Houseley et al. PLoS One
- Spliceosome Structure and Function
- (2010) C. L. Will et al. Cold Spring Harbor Perspectives in Biology
- Global and unbiased detection of splice junctions from RNA-seq data
- (2010) Adam Ameur et al. GENOME BIOLOGY
- PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots
- (2009) Yanga Byun et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The UCSC Genome Browser database: update 2010
- (2009) B. Rhead et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- When good transcripts go bad: artifactual RT-PCR ‘splicing’ and genome analysis
- (2008) Scott William Roy et al. BIOESSAYS
- An intronic alteration of the fibroblast growth factor 10 gene causing ALSG-(aplasia of lacrimal and salivary glands) syndrome
- (2008) Kathrin Scheckenbach et al. BMC Medical Genetics
- Dynamic Regulation of Alternative Splicing by Silencers that Modulate 5′ Splice Site Competition
- (2008) Yang Yu et al. CELL
- Regulation of Multiple Core Spliceosomal Proteins by Alternative Splicing-Coupled Nonsense-Mediated mRNA Decay
- (2008) A. L. Saltzman et al. MOLECULAR AND CELLULAR BIOLOGY
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
- Touchdown PCR for increased specificity and sensitivity in PCR amplification
- (2008) Darren J Korbie et al. Nature Protocols
- A universal classification of eukaryotic transposable elements implemented in Repbase
- (2008) Vladimir V. Kapitonov et al. NATURE REVIEWS GENETICS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- The Vienna RNA Websuite
- (2008) A. R. Gruber et al. NUCLEIC ACIDS RESEARCH
- RNA landscape of evolution for optimal exon and intron discrimination
- (2008) C. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
- (2008) M. Sultan et al. SCIENCE
- Annotating genomes with massive-scale RNA sequencing
- (2008) France Denoeud et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search