DDI-CPI, a server that predicts drug–drug interactions through implementing the chemical–protein interactome

Gene Expression Variability in Human Hepatic Drug Metabolizing Enzymes and Transporters

(2014) Lun Yang et al.   PLoS One

Consensus Docking: Improving the Reliability of Docking in a Virtual Screening Context

(2013) Douglas R. Houston et al.   Journal of Chemical Information and Modeling

Detection of Drug-Drug Interactions by Modeling Interaction Profile Fingerprints

(2013) Santiago Vilar et al.   PLoS One

Systematic Prediction of Pharmacodynamic Drug-Drug Interactions through Protein-Protein-Interaction Network

(2013) Jialiang Huang et al.   PLoS Computational Biology

INDI: a computational framework for inferring drug interactions and their associated recommendations

(2012) Assaf Gottlieb et al.   Molecular Systems Biology

Literature Based Drug Interaction Prediction with Clinical Assessment Using Electronic Medical Records: Novel Myopathy Associated Drug Interactions

(2012) Jon D. Duke et al.   PLoS Computational Biology

Advances in Human Cytochrome P450 and Personalized Medicine

(2011) Qi Chen et al.   CURRENT DRUG METABOLISM

A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports

(2011) Nicholas P Tatonetti et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical–protein interactome

(2011) Heng Luo et al.   NUCLEIC ACIDS RESEARCH

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Open Babel: An open chemical toolbox

(2011) Noel M O'Boyle et al.   Journal of Cheminformatics

Exploring Off-Targets and Off-Systems for Adverse Drug Reactions via Chemical-Protein Interactome — Clozapine-Induced Agranulocytosis as a Case Study

(2011) Lun Yang et al.   PLoS Computational Biology

In silico prediction of efavirenz and rifampicin drug-drug interaction considering weight and CYP2B6 phenotype

(2010) Dinko Rekić et al.   BRITISH JOURNAL OF CLINICAL PHARMACOLOGY

PROMISCUOUS: a database for network-based drug-repositioning

(2010) J. von Eichborn et al.   NUCLEIC ACIDS RESEARCH

Identifying Unexpected Therapeutic Targets via Chemical-Protein Interactome

(2010) Lun Yang et al.   PLoS One

A Structure-Based Approach for Mapping Adverse Drug Reactions to the Perturbation of Underlying Biological Pathways

(2010) Izhar Wallach et al.   PLoS One

Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli

(2010) Y. Takatsuka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

(2009) Garrett M. Morris et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Mechanisms of drug combinations: interaction and network perspectives

(2009) Jia Jia et al.   NATURE REVIEWS DRUG DISCOVERY

SePreSA: a server for the prediction of populations susceptible to serious adverse drug reactions implementing the methodology of a chemical–protein interactome

(2009) Lun Yang et al.   NUCLEIC ACIDS RESEARCH

Harvesting Candidate Genes Responsible for Serious Adverse Drug Reactions from a Chemical-Protein Interactome

(2009) Lun Yang et al.   PLoS Computational Biology

Drug Discovery Using Chemical Systems Biology: Identification of the Protein-Ligand Binding Network To Explain the Side Effects of CETP Inhibitors

(2009) Li Xie et al.   PLoS Computational Biology

Use of Prescription and Over-the-counter Medications and Dietary Supplements Among Older Adults in the United States

(2008)   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Drug Target Identification Using Side-Effect Similarity

(2008) M. Campillos et al.   SCIENCE