A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors inArabidopsis thaliana

Bayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mers

(2013) Bo Jiang et al.   BIOINFORMATICS

Structure, Function and Networks of Transcription Factors Involved in Abiotic Stress Responses

(2013) Søren Lindemose et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcription Factor NF-Y Is a Functional Regulator of the Transcription of Core Clock GeneBmal1

(2013) Jun Xiao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Multiplex and homologous recombination–mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9

(2013) Jian-Feng Li et al.   NATURE BIOTECHNOLOGY

Mapping the fine structure of a eukaryotic promoter input-output function

(2013) Arun S Rajkumar et al.   NATURE GENETICS

Overexpression of AtNAC2 (ANAC092) in groundnut (Arachis hypogaea L.) improves abiotic stress tolerance

(2013) Mahesh Patil et al.   Plant Biotechnology Reports

A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves

(2013) Richard Hickman et al.   PLANT JOURNAL

DNA-binding specificity changes in the evolution of forkhead transcription factors

(2013) S. Nakagawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape

(2013) Raluca Gordân et al.   Cell Reports

Navigating the transcriptional roadmap regulating plant secondary cell wall deposition

(2013) Steven G. Hussey et al.   Frontiers in Plant Science

ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana

(2013) Michael Krogh Jensen et al.   FEBS Open Bio

DNA binding by the plant-specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factors

(2012) Ditte H. Welner et al.   BIOCHEMICAL JOURNAL

Co-expression analysis identifies putative targets for CBP60g and SARD1 regulation

(2012) William Truman et al.   BMC PLANT BIOLOGY

Coronatine Promotes Pseudomonas syringae Virulence in Plants by Activating a Signaling Cascade that Inhibits Salicylic Acid Accumulation

(2012) Xiao-yu Zheng et al.   Cell Host & Microbe

Systematic Identification of Functional Plant Modules through the Integration of Complementary Data Sources

(2012) K. S. Heyndrickx et al.   PLANT PHYSIOLOGY

NAC proteins: regulation and role in stress tolerance

(2012) Swati Puranik et al.   TRENDS IN PLANT SCIENCE

NAC transcription factors in plant abiotic stress responses

(2011) Kazuo Nakashima et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Senescence-associated Barley NAC (NAM, ATAF1,2, CUC) Transcription Factor Interacts with Radical-induced Cell Death 1 through a Disordered Regulatory Domain

(2011) Trine Kjaersgaard et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex

(2011) T. Siggers et al.   Molecular Systems Biology

Using a structural and logics systems approach to infer bHLH–DNA binding specificity determinants

(2011) Federico De Masi et al.   NUCLEIC ACIDS RESEARCH

VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation

(2011) Masatoshi Yamaguchi et al.   PLANT JOURNAL

Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform

(2011) M. Van Bel et al.   PLANT PHYSIOLOGY

Dynamic protein–DNA recognition: beyond what can be seen

(2011) Monika Fuxreiter et al.   TRENDS IN BIOCHEMICAL SCIENCES

Redefining plant systems biology: from cell to ecosystem

(2011) Joost J.B. Keurentjes et al.   TRENDS IN PLANT SCIENCE

Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits

(2011) Daniel Wong et al.   GENOME BIOLOGY

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Arabidopsis paves the way: genomic and network analyses in crops

(2010) Thilia Ferrier et al.   CURRENT OPINION IN BIOTECHNOLOGY

Noncooperative Interactions between Transcription Factors and Clustered DNA Binding Sites Enable Graded Transcriptional Responses to Environmental Inputs

(2010) Luca Giorgetti et al.   MOLECULAR CELL

Global Analysis of Direct Targets of Secondary Wall NAC Master Switches in Arabidopsis

(2010) Ruiqin Zhong et al.   Molecular Plant

A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence

(2010) Salma Balazadeh et al.   PLANT JOURNAL

CORNET: A User-Friendly Tool for Data Mining and Integration

(2010) S. De Bodt et al.   PLANT PHYSIOLOGY

Root-Specific Expression of OsNAC10 Improves Drought Tolerance and Grain Yield in Rice under Field Drought Conditions

(2010) J. S. Jeong et al.   PLANT PHYSIOLOGY

TheArabidopsis thalianaNAC transcription factor family: structure–function relationships and determinants of ANAC019 stress signalling

(2009) Michael K. Jensen et al.   BIOCHEMICAL JOURNAL

A Multiparameter Network Reveals Extensive Divergence between C. elegans bHLH Transcription Factors

(2009) Christian A. Grove et al.   CELL

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors

(2009) Michael F Berger et al.   Nature Protocols

Cold activation of a plasma membrane-tethered NAC transcription factor induces a pathogen resistance response in Arabidopsis

(2009) Pil Joon Seo et al.   PLANT JOURNAL

Suppressor of gamma response 1 (SOG1) encodes a putative transcription factor governing multiple responses to DNA damage

(2009) K. Yoshiyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and Complexity in DNA Recognition by Transcription Factors

(2009) G. Badis et al.   SCIENCE

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

(2008) Michael F. Berger et al.   CELL

Analysis of Homeodomain Specificities Allows the Family-wide Prediction of Preferred Recognition Sites

(2008) Marcus B. Noyes et al.   CELL

Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses

(2008) Qingyun Bu et al.   CELL RESEARCH

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

(2008) D. E. Newburger et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

The OSU1/QUA2/TSD2-Encoded Putative Methyltransferase Is a Critical Modulator of Carbon and Nitrogen Nutrient Balance Response in Arabidopsis

(2008) Peng Gao et al.   PLoS One