RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs

Efficient alignment of RNA secondary structures using sparse dynamic programming

(2013) Cuncong Zhong et al.   BMC BIOINFORMATICS

Visualizing the ai5γ group IIB intron

(2013) Srinivas Somarowthu et al.   NUCLEIC ACIDS RESEARCH

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction

(2013) Tomasz Puton et al.   NUCLEIC ACIDS RESEARCH

RNAlyzer—novel approach for quality analysis of RNA structural models

(2013) Piotr Lukasiak et al.   NUCLEIC ACIDS RESEARCH

RNA2D3D: A program for Generating, Viewing, and Comparing 3-Dimensional Models of RNA

(2012) Hugo M. Martinez et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

R- chie : a web server and R package for visualizing RNA secondary structures

(2012) Daniel Lai et al.   NUCLEIC ACIDS RESEARCH

Automated 3D structure composition for large RNAs

(2012) Mariusz Popenda et al.   NUCLEIC ACIDS RESEARCH

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures

(2010) Mariusz Popenda et al.   BMC BIOINFORMATICS

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

FASTR3D: a fast and accurate search tool for similar RNA 3D structures

(2009) C.-E. Lai et al.   NUCLEIC ACIDS RESEARCH

Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures

(2009) G. Zheng et al.   NUCLEIC ACIDS RESEARCH

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE

From knotted to nested RNA structures: A variety of computational methods for pseudoknot removal

(2008) S. Smit et al.   RNA