Competitive binding-based optical DNA mapping for fast identification of bacteria - multi-ligand transfer matrix theory and experimental applications on Escherichia coli

STED nanoscopy combined with optical tweezers reveals protein dynamics on densely covered DNA

(2013) Iddo Heller et al.   NATURE METHODS

Heterogeneous staining: a tool for studies of how fluorescent dyes affect the physical properties of DNA

(2013) Lena Nyberg et al.   NUCLEIC ACIDS RESEARCH

Integrated view of genome structure and sequence of a single DNA molecule in a nanofluidic device

(2013) R. Marie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing Allostery Through DNA

(2013) S. Kim et al.   SCIENCE

Denaturation mapping of Saccharomyces cerevisiae

(2012) Robert L. Welch et al.   LAB ON A CHIP

Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly

(2012) Ernest T Lam et al.   NATURE BIOTECHNOLOGY

Genome-Wide Detection of Spontaneous Chromosomal Rearrangements in Bacteria

(2012) Song Sun et al.   PLoS One

A single-step competitive binding assay for mapping of single DNA molecules

(2011) Lena K. Nyberg et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Optical mapping of DNA: Single-molecule-based methods for mapping genomes

(2011) Robert K. Neely et al.   BIOPOLYMERS

Calculating transcription factor binding maps for chromatin

(2011) V. B. Teif et al.   BRIEFINGS IN BIOINFORMATICS

DNA in nanochannels—directly visualizing genomic information

(2010) Fredrik Persson et al.   CHEMICAL SOCIETY REVIEWS

Single molecule linear analysis of DNA in nano-channel labeled with sequence specific fluorescent probes

(2010) S. K. Das et al.   NUCLEIC ACIDS RESEARCH

Nucleosome-mediated cooperativity between transcription factors

(2010) L. A. Mirny   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-molecule denaturation mapping of DNA in nanofluidic channels

(2010) W. Reisner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA fluorocode: A single molecule, optical map of DNA with nanometre resolution

(2010) Robert K. Neely et al.   Chemical Science

Quantitative Test of the Barrier Nucleosome Model for Statistical Positioning of Nucleosomes Up- and Downstream of Transcription Start Sites

(2010) Wolfram Möbius et al.   PLoS Computational Biology

The next-generation sequencing technology and application

(2010) Xiaoguang Zhou et al.   Protein & Cell

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY