Antisense transcripts enhanced by camptothecin at divergent CpG-island promoters associated with bursts of topoisomerase I-DNA cleavage complex and R-loop formation
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Title
Antisense transcripts enhanced by camptothecin at divergent CpG-island promoters associated with bursts of topoisomerase I-DNA cleavage complex and R-loop formation
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume 41, Issue 22, Pages 10110-10123
Publisher
Oxford University Press (OUP)
Online
2013-09-03
DOI
10.1093/nar/gkt778
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Note: Only part of the references are listed.- Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
- (2013) Catherine Naughton et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
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- (2012) Andrés Aguilera et al. MOLECULAR CELL
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- (2012) Robert E. Thurman et al. NATURE
- Characterization of novel antisense HIF-1α transcripts in human cancers
- (2011) Davide Bertozzi et al. CELL CYCLE
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- (2011) Hsien-Sung Huang et al. NATURE
- Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes
- (2011) Eivind Valen et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome
- (2011) R. A. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mutagenic Processing of Ribonucleotides in DNA by Yeast Topoisomerase I
- (2011) N. Kim et al. SCIENCE
- SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
- (2010) Murray P Cox et al. BMC BIOINFORMATICS
- Genome-wide Analysis of Novel Splice Variants Induced by Topoisomerase I Poisoning Shows Preferential Occurrence in Genes Encoding Splicing Factors
- (2010) S. Solier et al. CANCER RESEARCH
- Topoisomerase I regulates open chromatin and controls gene expression in vivo
- (2010) Mickaël Durand-Dubief et al. EMBO JOURNAL
- Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis
- (2010) A. El Hage et al. GENES & DEVELOPMENT
- Distinguishing the Roles of Topoisomerases I and II in Relief of Transcription-Induced Torsional Stress in Yeast rRNA Genes
- (2010) S. L. French et al. MOLECULAR AND CELLULAR BIOLOGY
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- (2010) Aditi Kanhere et al. MOLECULAR CELL
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Bidirectional promoters generate pervasive transcription in yeast
- (2009) Zhenyu Xu et al. NATURE
- Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
- (2009) Helen Neil et al. NATURE
- Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription
- (2009) Sandie Tuduri et al. NATURE CELL BIOLOGY
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
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- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Global Transcription Regulation by DNA Topoisomerase I in Exponentially Growing Saccharomyces cerevisiae Cells: Activation of Telomere-Proximal Genes by TOP1 Deletion
- (2008) Luca Lotito et al. JOURNAL OF MOLECULAR BIOLOGY
- Hyperphosphorylation of RNA Polymerase II in Response to Topoisomerase I Cleavage Complexes and Its Association with Transcription- and BRCA1-dependent Degradation of Topoisomerase I
- (2008) Olivier Sordet et al. JOURNAL OF MOLECULAR BIOLOGY
- Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
- (2008) Xiangting Wang et al. NATURE
- Genome instability: a mechanistic view of its causes and consequences
- (2008) Andrés Aguilera et al. NATURE REVIEWS GENETICS
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- Divergent Transcription from Active Promoters
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- The Antisense Transcriptomes of Human Cells
- (2008) Yiping He et al. SCIENCE
- RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters
- (2008) Pascal Preker et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
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