miRNEST 2.0: a database of plant and animal microRNAs

HuntMi: an efficient and taxon-specific approach in pre-miRNA identification

(2013) Adam Gudyś et al.   BMC BIOINFORMATICS

Developmentally regulated expression and complex processing of barley pri-microRNAs

(2013) Katarzyna Kruszka et al.   BMC GENOMICS

ERISdb: A Database of Plant Splice Sites and Splicing Signals

(2013) Michał Wojciech Szcześniak et al.   PLANT AND CELL PHYSIOLOGY

Discovery of hundreds of mirtrons in mouse and human small RNA data

(2012) E. Ladewig et al.   GENOME RESEARCH

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

(2012) Leighton Folkes et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

miRNeye: a microRNA expression atlas of the mouse eye

(2011) Marianthi Karali et al.   BMC GENOMICS

miRNEST database: an integrative approach in microRNA search and annotation

(2011) Michał Wojciech Szcześniak et al.   NUCLEIC ACIDS RESEARCH

Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans

(2010) W.-J. Chung et al.   GENOME RESEARCH

Posttranscriptional Regulation of MicroRNA Biogenesis in Animals

(2010) Haruhiko Siomi et al.   MOLECULAR CELL

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

Sequence mining and transcript profiling to explore cyst nematode parasitism

(2009) Axel A Elling et al.   BMC GENOMICS

MicroPC (μPC): A comprehensive resource for predicting and comparing plant microRNAs

(2009) Wuttichai Mhuantong et al.   BMC GENOMICS

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs

(2009) Barbara Lazzari et al.   BMC PLANT BIOLOGY

PMRD: plant microRNA database

(2009) Zhenhai Zhang et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Splign: algorithms for computing spliced alignments with identification of paralogs

(2008) Yuri Kapustin et al.   Biology Direct

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL