Thermodynamic studies of a series of homologous HIV-1 TAR RNA ligands reveal that loose binders are stronger Tat competitors than tight ones

Click Dimers To Target HIV TAR RNA Conformation

(2012) Sunil Kumar et al.   BIOCHEMISTRY

Thermodynamic studies for drug design and screening

(2012) Nichola C Garbett et al.   Expert Opinion on Drug Discovery

Thermodynamics and solvation dynamics of BIV TAR RNA–Tat peptide interaction

(2012) Teena Goel et al.   Molecular BioSystems

The fundamental role of flexibility on the strength of molecular binding

(2012) Christopher Forrey et al.   Soft Matter

Recent Advances in Developing Small Molecules Targeting RNA

(2011) Lirui Guan et al.   ACS Chemical Biology

Large Favorable Enthalpy Changes Drive Specific RNA Recognition by RNA Recognition Motif Proteins

(2011) Krystle J. McLaughlin et al.   BIOCHEMISTRY

Novel Ligands for a Purine Riboswitch Discovered by RNA-Ligand Docking

(2011) Peter Daldrop et al.   CHEMISTRY & BIOLOGY

kinITC: A New Method for Obtaining Joint Thermodynamic and Kinetic Data by Isothermal Titration Calorimetry

(2011) Dominique Burnouf et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Specificity of RSG-1.2 Peptide Binding to RRE-IIB RNA Element of HIV-1 over Rev Peptide Is Mainly Enthalpic in Origin

(2011) Santosh Kumar et al.   PLoS One

Polyamide Amino Acids trimers as TAR RNA ligands and anti-HIV agents

(2010) Vanessa Bonnard et al.   BIOORGANIC & MEDICINAL CHEMISTRY

A Medicinal Chemist’s Guide to Molecular Interactions

(2010) Caterina Bissantz et al.   JOURNAL OF MEDICINAL CHEMISTRY

Thermodynamics of Peptide−RNA Recognition: The Binding of a Tat Peptide to TAR RNA

(2010) Hemant Suryawanshi et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Essential structural requirements for specific recognition of HIV TAR RNA by peptide mimetics of Tat protein

(2010) Amy Davidson et al.   NUCLEIC ACIDS RESEARCH

Circular Dichroism Techniques: Biomolecular and Nanostructural Analyses- A Review

(2009) Bijan Ranjbar et al.   Chemical Biology & Drug Design

Polyamide amino acids: a new class of RNA ligands

(2009) Vanessa Bonnard et al.   CHEMICAL COMMUNICATIONS

Strategies for the design of RNA-binding small molecules

(2009) Fareed Aboul-ela   Future Medicinal Chemistry

A synthetic CD4–heparan sulfate glycoconjugate inhibits CCR5 and CXCR4 HIV-1 attachment and entry

(2009) Françoise Baleux et al.   Nature Chemical Biology

How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape

(2009) Michael F. Bardaro et al.   NUCLEIC ACIDS RESEARCH

Circular dichroism and conformational polymorphism of DNA

(2009) J. Kypr et al.   NUCLEIC ACIDS RESEARCH

Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein

(2009) A. Davidson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A graphical user interface for BIOEQS: A program for simulating and analyzing complex biomolecular interactions

(2008) Tilman Rosales et al.   ANALYTICAL BIOCHEMISTRY

PDBcal: A Comprehensive Dataset for Receptor–Ligand Interactions with Three-dimensional Structures and Binding Thermodynamics from Isothermal Titration Calorimetry

(2008) Liwei Li et al.   Chemical Biology & Drug Design

Targeting RNA with Small Molecules

(2008) Jason R. Thomas et al.   CHEMICAL REVIEWS

RNA targeting through binding of small molecules: Studies on t-RNA binding by the cytotoxic protoberberine alkaloidcoralyne

(2008) Md. Maidul Islam et al.   Molecular BioSystems