Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data
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Title
Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume 41, Issue 21, Pages e201-e201
Publisher
Oxford University Press (OUP)
Online
2013-09-27
DOI
10.1093/nar/gkt850
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- (2011) Ty C. Voss et al. CELL
- Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
- (2011) Ho Sung Rhee et al. CELL
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- (2010) A. P. Boyle et al. GENOME RESEARCH
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