An aromatic residue switch in enhancer-dependent bacterial RNA polymerase controls transcription intermediate complex activity

The σ 70 region 1.2 regulates promoter escape by unwinding DNA downstream of the transcription start site

(2013) Aleksandra Bochkareva et al.   NUCLEIC ACIDS RESEARCH

Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs

(2012) I. O. Vvedenskaya et al.   GENES & DEVELOPMENT

Routine Access to Millisecond Time Scale Events with Accelerated Molecular Dynamics

(2012) Levi C.T. Pierce et al.   Journal of Chemical Theory and Computation

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born

(2012) Andreas W. Götz et al.   Journal of Chemical Theory and Computation

The Transcription Bubble of the RNA Polymerase–Promoter Open Complex Exhibits Conformational Heterogeneity and Millisecond-Scale Dynamics: Implications for Transcription Start-Site Selection

(2012) Nicole C. Robb et al.   JOURNAL OF MOLECULAR BIOLOGY

A dual switch controls bacterial enhancer-dependent transcription

(2012) Simone C. Wiesler et al.   NUCLEIC ACIDS RESEARCH

Opening and Closing of the Bacterial RNA Polymerase Clamp

(2012) A. Chakraborty et al.   SCIENCE

Structural Basis of Transcription Initiation

(2012) Y. Zhang et al.   SCIENCE

RNA Transcript 3′-Proximal Sequence Affects Translocation Bias of RNA Polymerase

(2011) Pyae P. Hein et al.   BIOCHEMISTRY

Coupling AAA protein function to regulated gene expression

(2011) Nicolas Joly et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

(2011) Andrey Feklistov et al.   CELL

A Critical Role of Downstream RNA Polymerase-Promoter Interactions in the Formation of Initiation Complex

(2011) Vladimir Mekler et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Activity Map of theEscherichia coliRNA Polymerase Bridge Helix

(2011) Milija Jovanovic et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

NanoRNAs: A Class of Small RNAs That Can Prime Transcription Initiation in Bacteria

(2011) Bryce E. Nickels et al.   JOURNAL OF MOLECULAR BIOLOGY

NanoRNAs Prime Transcription Initiation In Vivo

(2011) Seth R. Goldman et al.   MOLECULAR CELL

Structural basis of RNA polymerase II backtracking, arrest and reactivation

(2011) Alan C. M. Cheung et al.   NATURE

All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay

(2010) Joel G. Belasco   NATURE REVIEWS MOLECULAR CELL BIOLOGY

One-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex

(2010) T. J. Gries et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A prehydrolysis state of an AAA+ ATPase supports transcription activation of an enhancer-dependent RNA polymerase

(2010) P. C. Burrows et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach

(2010) Natacha Opalka et al.   PLOS BIOLOGY

Structures of RNA polymerase–antibiotic complexes

(2009) Mary X Ho et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Principles of c-di-GMP signalling in bacteria

(2009) Regine Hengge   NATURE REVIEWS MICROBIOLOGY

Structural and mechanistic determinants of c-di-GMP signalling

(2009) Tilman Schirmer et al.   NATURE REVIEWS MICROBIOLOGY

The role of the conserved phenylalanine in the σ54-interacting GAFTGA motif of bacterial enhancer binding proteins

(2009) Nan Zhang et al.   NUCLEIC ACIDS RESEARCH

Direct Detection of Abortive RNA Transcripts in Vivo

(2009) S. R. Goldman et al.   SCIENCE

Dissecting the ATP hydrolysis pathway of bacterial enhancer-binding proteins

(2008) Daniel Bose et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

An Intramolecular Route for Coupling ATPase Activity in AAA+Proteins for Transcription Activation

(2008) Nicolas Joly et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Monitoring abortive initiation

(2008) Lilian M. Hsu   METHODS

Organization of an Activator-Bound RNA Polymerase Holoenzyme

(2008) Daniel Bose et al.   MOLECULAR CELL

Structural evolution of multisubunit RNA polymerases

(2008) Finn Werner   TRENDS IN MICROBIOLOGY