PromoterCAD: data-driven design of plant regulatory DNA

Small open reading frames associated with morphogenesis are hidden in plant genomes

(2013) K. Hanada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DeviceEditor visual biological CAD canvas

(2012) Joanna Chen et al.   Journal of Biological Engineering

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Designer promoter: an artwork of cis engineering

(2011) Rajesh Mehrotra et al.   PLANT MOLECULAR BIOLOGY

Eugene – A Domain Specific Language for Specifying and Constraining Synthetic Biological Parts, Devices, and Systems

(2011) Lesia Bilitchenko et al.   PLoS One

Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana

(2011) C. Zou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

j5 DNA Assembly Design Automation Software

(2011) Nathan J. Hillson et al.   ACS Synthetic Biology

SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs

(2010) E. Weeding et al.   BRIEFINGS IN BIOINFORMATICS

Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways

(2010) Takeshi Obayashi et al.   JOURNAL OF PLANT RESEARCH

Writing DNA with GenoCADTM

(2009) M. J. Czar et al.   NUCLEIC ACIDS RESEARCH

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis

(2009) Yoshiharu Y. Yamamoto et al.   PLANT JOURNAL

TinkerCell: modular CAD tool for synthetic biology

(2009) Deepak Chandran et al.   Journal of Biological Engineering

Refinement and standardization of synthetic biological parts and devices

(2008) Barry Canton et al.   NATURE BIOTECHNOLOGY