Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus

Processing of plant microRNA precursors

(2012) N. G. Bologna et al.   Briefings in Functional Genomics

Computational methods for ab initio detection of microRNAs

(2012) Jens Allmer et al.   Frontiers in Genetics

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis

(2011) Aiyou Huang et al.   BMC GENOMICS

Targeting Notch signalling by the conserved miR-8/200 microRNA family in development and cancer cells

(2011) Diana M Vallejo et al.   EMBO JOURNAL

ETOILERegulates Developmental Patterning in the Filamentous Brown AlgaEctocarpus siliculosus

(2011) Aude Le Bail et al.   PLANT CELL

Vive la différence: biogenesis and evolution of microRNAs in plants and animals

(2011) Michael J Axtell et al.   GENOME BIOLOGY

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

(2010) Anthony Mathelier et al.   BIOINFORMATICS

MiR-138 inhibits EZH2 methyltransferase expression and methylation of histone H3 at lysine 27, and affects thermotolerance acquisition

(2010) Tatiana Kisliouk et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

(2010) J. Mark Cock et al.   NATURE

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

(2010) L. Baxter et al.   SCIENCE

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

(2010) C André Lévesque et al.   GENOME BIOLOGY

Microtubule-Nucleus Interactions inDictyostelium discoideumMediated by Central Motor Kinesins

(2009) Irina Tikhonenko et al.   EUKARYOTIC CELL

Dicer-like (DCL) proteins in plants

(2009) Qingpo Liu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Abundant conserved microRNA target sites in the 5′-untranslated region and coding sequence

(2009) Xue Zhou et al.   GENETICA

Targeting of Integrin β1 and Kinesin 2α by MicroRNA 183

(2009) Guorong Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An Evolutionary Perspective of Animal MicroRNAs and Their Targets

(2009) Noam Shomron et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Dicer is regulated by cellular stresses and interferons

(2009) Jennifer L. Wiesen et al.   MOLECULAR IMMUNOLOGY

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Revisiting the principles of microRNA target recognition and mode of action

(2009) Peter Brodersen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Current tools for the identification of miRNA genes and their targets

(2009) N. D. Mendes et al.   NUCLEIC ACIDS RESEARCH

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

(2009) Simon M Dittami et al.   GENOME BIOLOGY

Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins

(2009) Francisco Merchan et al.   GENOME BIOLOGY

A novel and universal method for microRNA RT-qPCR data normalization

(2009) Pieter Mestdagh et al.   GENOME BIOLOGY

Broadly sampled multigene trees of eukaryotes

(2008) Hwan Su Yoon et al.   BMC EVOLUTIONARY BIOLOGY

Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

(2008) Meenu Kapoor et al.   BMC GENOMICS

Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus

(2008) Aude Le Bail et al.   BMC MOLECULAR BIOLOGY

Genomic analysis of rice microRNA promoters and clusters

(2008) Xiao Cui et al.   GENE

A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains

(2008) Q.-H. Zhu et al.   GENOME RESEARCH

RESOLVING EVOLUTIONARY RELATIONSHIPS AMONG THE BROWN ALGAE USING CHLOROPLAST AND NUCLEAR GENES

(2008) Naomi Phillips et al.   JOURNAL OF PHYCOLOGY

EARLY DEVELOPMENT PATTERN OF THE BROWN ALGAECTOCARPUS SILICULOSUS(ECTOCARPALES, PHAEOPHYCEAE) SPOROPHYTE1

(2008) Aude Le Bail et al.   JOURNAL OF PHYCOLOGY

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

Evolution of Arabidopsis MIR genes generates novel microRNA classes

(2008) Franck Vazquez et al.   NUCLEIC ACIDS RESEARCH